Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g03770.t01 | |
| VIT_12s0057g00690.t01 | |
| VIT_14s0108g00940.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69705 | Canola | cytosol | 11.45 | 79.17 |
| KRH67862 | Soybean | nucleus | 78.92 | 78.44 |
| KRG96151 | Soybean | nucleus | 78.31 | 77.84 |
| Solyc09g009210.2.1 | Tomato | nucleus | 75.9 | 75.9 |
| Bra017239.1-P | Field mustard | cytosol | 58.43 | 74.62 |
| PGSC0003DMT400007017 | Potato | nucleus | 74.1 | 74.1 |
| CDY27436 | Canola | cytosol | 45.18 | 72.12 |
| Solyc10g083520.1.1 | Tomato | plastid | 72.29 | 70.59 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 72.29 | 70.59 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 72.29 | 69.77 |
| Bra028542.1-P | Field mustard | nucleus | 66.27 | 69.62 |
| CDX67549 | Canola | nucleus | 66.27 | 69.18 |
| CDY13331 | Canola | nucleus | 67.47 | 69.14 |
| CDY66899 | Canola | nucleus | 71.08 | 68.6 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 72.29 | 67.42 |
| CDY60156 | Canola | cytosol, plastid | 72.29 | 67.42 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 71.69 | 66.85 |
| Bra001292.1-P | Field mustard | nucleus | 71.08 | 65.56 |
| CDX78133 | Canola | nucleus | 65.06 | 65.45 |
| Bra006959.1-P | Field mustard | nucleus | 65.06 | 65.45 |
| CDY00898 | Canola | cytosol, plastid | 69.88 | 65.17 |
| CDX74002 | Canola | nucleus | 70.48 | 65.0 |
| CDX73594 | Canola | nucleus | 63.86 | 63.86 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 60.84 | 63.52 |
| AT5G03660.1 | Thale cress | nucleus | 63.86 | 61.27 |
| CDY43720 | Canola | nucleus | 64.46 | 61.14 |
| CDY17934 | Canola | cytosol | 54.82 | 60.67 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 63.25 | 60.0 |
| AT3G52920.1 | Thale cress | nucleus | 65.06 | 60.0 |
| CDX70295 | Canola | nucleus | 62.05 | 59.54 |
| CDY10366 | Canola | nucleus | 62.05 | 59.54 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.84 | 59.06 |
| CDY32440 | Canola | cytosol | 55.42 | 58.97 |
| CDY25859 | Canola | cytosol | 55.42 | 58.97 |
| CDY70153 | Canola | nucleus, plastid | 62.05 | 58.86 |
| Zm00001d016683_P001 | Maize | nucleus | 59.04 | 58.68 |
| Os04t0408600-01 | Rice | cytosol | 59.64 | 58.58 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 59.04 | 57.99 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 59.04 | 57.99 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 59.04 | 57.99 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 60.24 | 57.8 |
| Bra017238.1-P | Field mustard | plastid | 65.06 | 56.84 |
| CDY43719 | Canola | plastid | 65.06 | 56.54 |
| EES12098 | Sorghum | nucleus | 57.23 | 56.21 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 65.66 | 55.9 |
| Zm00001d025338_P001 | Maize | nucleus | 57.23 | 55.88 |
| Os02t0528100-01 | Rice | cytosol | 57.23 | 54.6 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 63.25 | 54.4 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 57.23 | 53.98 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 57.23 | 53.98 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 57.23 | 53.98 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 57.23 | 53.98 |
| EES06901 | Sorghum | nucleus | 57.23 | 52.78 |
| CDX79678 | Canola | cytosol | 47.59 | 51.63 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 56.02 | 46.04 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 22.89 | 43.18 |
| Bra023068.1-P | Field mustard | nucleus | 65.06 | 37.63 |
| CDY71050 | Canola | cytosol | 42.77 | 24.4 |
| Bra027585.1-P | Field mustard | plastid | 45.18 | 16.27 |
Protein Annotations
| ArrayExpress:VIT_08s0007g03770 | EMBL:FN595991 | EnsemblPlants:VIT_08s0007g03770.t01 | EnsemblPlantsGene:VIT_08s0007g03770 | EntrezGene:100256294 | EntrezGene:LOC100256294 |
| InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 | PFAM:PF04949 | ProteinID:CCB55407 |
| ProteinID:CCB55407.1 | RefSeq:XP_002283313 | RefSeq:XP_002283313.1 | SEG:seg | TIGR:TC52326 | TIGR:TC55440 |
| UniParc:UPI00015C92A5 | UniProt:F6HKI5 | wikigene:100256294 | wikigene:LOC100256294 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr8:+:17734810..17736343
Molecular Weight (calculated)
19359.2 Da
IEP (calculated)
7.369
GRAVY (calculated)
-1.054
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEMIQAQKQ QAWEQNSGSL SFNGSLSKEE EEMSKSALST FRAKEEEIEK KKLEVREKVQ VQLGRVEEET RRLATIREEL EALADPMRKE VAQVRKKIDS
101: VNRDLKPLGQ SCQKKEKEYK DALEAYNEKN KEKVQLISKL MELVSESERL RMKKLEELSK NIDSMH
101: VNRDLKPLGQ SCQKKEKEYK DALEAYNEKN KEKVQLISKL MELVSESERL RMKKLEELSK NIDSMH
001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
Arabidopsis Description
Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.