CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00898
CDY17934
CDY25859
CDY27436
CDY32440
CDY34693
CDY37538
CDY43274
CDY55806
CDY60156
CDY70153
CDY71050

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	CDY34693	AT3G01180.1	21798944
AT3G09980.1	CDY37538	AT3G01180.1	21798944
AT3G09980.1	CDY43274	AT3G01180.1	21798944
AT3G09980.1	CDY55806	AT3G01180.1	21798944
AT3G09980.1	CDY00898	AT3G09980.1	21798944
AT3G09980.1	CDY17934	AT3G09980.1	21798944
AT3G09980.1	CDY25859	AT3G09980.1	21798944
AT3G09980.1	CDY27436	AT3G09980.1	21798944
AT3G09980.1	CDY32440	AT3G09980.1	21798944
AT3G09980.1	CDY60156	AT3G09980.1	21798944
AT3G09980.1	CDY70153	AT3G09980.1	21798944
AT3G09980.1	CDY71050	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027585.1-P	Field mustard	plastid	95.53	60.3
CDY27436	Canola	cytosol	19.93	55.77
CDY17934	Canola	cytosol	28.52	55.33
CDY32440	Canola	cytosol	29.55	55.13
CDY25859	Canola	cytosol	29.55	55.13
CDY00898	Canola	cytosol, plastid	30.58	50.0
CDX67549	Canola	nucleus	26.46	48.43
CDY60156	Canola	cytosol, plastid	29.55	48.31
CDY13331	Canola	nucleus	26.8	48.15
CDY70153	Canola	nucleus, plastid	28.87	48.0
AT3G09980.1	Thale cress	nucleus, plastid	29.21	47.75
KRH67862	Soybean	nucleus	27.15	47.31
KRG96151	Soybean	nucleus	26.8	46.71
CDY66899	Canola	nucleus	27.49	46.51
CDX78133	Canola	nucleus	25.77	45.45
CDX74002	Canola	nucleus	27.84	45.0
CDX73594	Canola	nucleus	25.43	44.58
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	25.09	42.94
CDY10366	Canola	nucleus	25.43	42.77
CDX70295	Canola	nucleus	25.43	42.77
VIT_08s0007g03770.t01	Wine grape	nucleus	24.4	42.77
Solyc10g083520.1.1	Tomato	plastid	24.74	42.35
CDY43720	Canola	nucleus	25.43	42.29
GSMUA_Achr8P16080_001	Banana	nucleus	24.05	40.0
Solyc09g009210.2.1	Tomato	nucleus	22.68	39.76
GSMUA_Achr3P18940_001	Banana	nucleus	21.65	39.62
CDY57618	Canola	cytosol, mitochondrion, nucleus	23.71	39.2
CDX79677	Canola	cytosol, mitochondrion, nucleus	23.71	39.2
CDX84559	Canola	cytosol, nucleus, plastid	23.71	39.2
PGSC0003DMT400007017	Potato	nucleus	22.34	39.16
EES12098	Sorghum	nucleus	21.65	37.28
GSMUA_Achr2P20290_001	Banana	nucleus	21.99	36.99
Os04t0408600-01	Rice	cytosol	21.31	36.69
CDY43719	Canola	plastid	24.05	36.65
Zm00001d025338_P001	Maize	nucleus	21.31	36.47
HORVU2Hr1G072420.11	Barley	nucleus	20.62	35.5
TraesCS2A01G292600.1	Wheat	nucleus	20.62	35.5
TraesCS2D01G290400.1	Wheat	nucleus	20.62	35.5
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.62	35.09
Zm00001d016683_P001	Maize	nucleus	19.93	34.73
Os02t0528100-01	Rice	cytosol	19.93	33.33
EES06901	Sorghum	nucleus	20.27	32.78
CDY04510	Canola	cytosol, nucleus, plastid	18.9	32.54
CDX71428	Canola	cytosol	18.9	32.54
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	18.56	31.03
CDY13335	Canola	cytosol	16.84	29.7
CDX67543	Canola	cytosol, plastid	16.84	29.7
CDX79678	Canola	cytosol	15.46	29.41
CDY69705	Canola	cytosol	1.72	20.83

Protein Annotations

Gene3D:3.30.750.44	MapMan:35.1	GO:A0A078JX95	UniProt:A0A078JX95	EnsemblPlants:CDY71050	ProteinID:CDY71050
ProteinID:CDY71050.1	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0008150	GO:GO:0008152	GO:GO:0016705	GO:GO:0020037	GO:GO:0055114
InterPro:GORAB	EnsemblPlantsGene:GSBRNA2T00010938001	InterPro:IPR036396	PFAM:PF04949	PANTHER:PTHR24291	PANTHER:PTHR24291:SF100
SUPFAM:SSF48264	SUPFAM:SSF52096	UniParc:UPI0004EF3FA2	SEG:seg	:	:

Description

BnaAnng35900DBnaAnng35900D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JX95]

Coordinates

chrLK044279:-:606..2878

Molecular Weight (calculated)

33109.9 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.471

Length

291 amino acids

Sequence
(BLAST)

001: SQMSNEDEEM SRTALSAIMA KEEEIEKNKM EIRERVQAQL GRVEEETKRL AFIREELEGL AEPMRKEVAL ARKKIDSVNK ELKNGLSKLG VPRNVLDLMF
101: DWTGANEDYL KVPEAKGSIQ AVRNEAFFIP IYELFLTYGG IFRLTFGPKS FLIVSDPSIA KHILKDNAKA YSKQTMVEMF PLRSADAAYG KIKAMLSTLG
201: DPFTRIISPK EYQSFRIGSD GNLQGVGLFI NSEPETGRLK LRPDLSLRAL EASQRSPHHR AFPDSPCNYN DMLRSSESKI EERVRQILFR L

Best Arabidopsis Sequence Match ( AT1G31800.1 )
(BLAST)

001: MAMAFPLSYT PTITVKPVTY SRRSNFVVFS SSSNGRDPLE ENSVPNGVKS LEKLQEEKRR AELSARIASG AFTVRKSSFP STVKNGLSKI GIPSNVLDFM
101: FDWTGSDQDY PKVPEAKGSI QAVRNEAFFI PLYELFLTYG GIFRLTFGPK SFLIVSDPSI AKHILKDNAK AYSKGILAEI LDFVMGKGLI PADGEIWRRR
201: RRAIVPALHQ KYVAAMISLF GEASDRLCQK LDAAALKGEE VEMESLFSRL TLDIIGKAVF NYDFDSLTND TGVIEAVYTV LREAEDRSVS PIPVWDIPIW
301: KDISPRQRKV ATSLKLINDT LDDLIATCKR MVEEEELQFH EEYMNERDPS ILHFLLASGD DVSSKQLRDD LMTMLIAGHE TSAAVLTWTF YLLTTEPSVV
401: AKLQEEVDSV IGDRFPTIQD MKKLKYTTRV MNESLRLYPQ PPVLIRRSID NDILGEYPIK RGEDIFISVW NLHRSPLHWD DAEKFNPERW PLDGPNPNET
501: NQNFSYLPFG GGPRKCIGDM FASFENVVAI AMLIRRFNFQ IAPGAPPVKM TTGATIHTTE GLKLTVTKRT KPLDIPSVPI LPMDTSRDEV SSALS

Arabidopsis Description

CYP97A3Protein LUTEIN DEFICIENT 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93VK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.