Factsheet for GSMUA_Achr8P16080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr1P24640_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P17470_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36410.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr1P24640_001	AT3G01180.1	21798944
AT3G09980.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G52920.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20290_001	Banana	nucleus	72.57	73.41
Os04t0408600-01	Rice	cytosol	66.29	68.64
TraesCS2A01G292600.1	Wheat	nucleus	65.14	67.46
TraesCS2D01G290400.1	Wheat	nucleus	65.14	67.46
CDY69705	Canola	cytosol	9.14	66.67
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.14	66.67
HORVU2Hr1G072420.11	Barley	nucleus	64.0	66.27
GSMUA_Achr3P18940_001	Banana	nucleus	60.0	66.04
KRG96151	Soybean	nucleus	62.86	65.87
CDY27436	Canola	cytosol	38.86	65.38
Zm00001d025338_P001	Maize	nucleus	63.43	65.29
KRH67862	Soybean	nucleus	62.29	65.27
EES12098	Sorghum	nucleus	62.86	65.09
VIT_06s0061g01440.t01	Wine grape	nucleus	63.43	64.53
Zm00001d016683_P001	Maize	nucleus	61.14	64.07
VIT_08s0007g03770.t01	Wine grape	nucleus	60.0	63.25
Bra017239.1-P	Field mustard	cytosol	46.86	63.08
KRH25180	Soybean	plastid	61.71	61.36
KRH30497	Soybean	plastid	61.14	61.14
Bra028542.1-P	Field mustard	nucleus	54.86	60.76
CDX67549	Canola	nucleus	54.86	60.38
Solyc09g009210.2.1	Tomato	nucleus	57.14	60.24
PGSC0003DMT400007017	Potato	nucleus	57.14	60.24
PGSC0003DMT400068276	Potato	nucleus	59.43	60.12
AT3G09980.1	Thale cress	nucleus, plastid	61.14	60.11
CDY13331	Canola	nucleus	55.43	59.88
CDY60156	Canola	cytosol, plastid	60.57	59.55
Bra029810.1-P	Field mustard	cytosol, plastid	60.57	59.55
CDY66899	Canola	nucleus	58.29	59.3
Solyc11g066970.1.1	Tomato	nucleus	58.29	59.3
Os02t0528100-01	Rice	cytosol	58.86	59.2
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	56.57	58.24
Solyc10g083520.1.1	Tomato	plastid	56.57	58.24
CDY17934	Canola	cytosol	49.71	58.0
CDY00898	Canola	cytosol, plastid	58.86	57.87
EES06901	Sorghum	nucleus	59.43	57.78
KRG92044	Soybean	nucleus	55.43	57.4
CDX73594	Canola	nucleus	54.29	57.23
Bra006959.1-P	Field mustard	nucleus	53.71	56.97
CDX78133	Canola	nucleus	53.71	56.97
Bra001292.1-P	Field mustard	nucleus	58.29	56.67
CDX74002	Canola	nucleus	57.71	56.11
KRH34738	Soybean	cytosol	54.86	55.81
Bra012002.1-P	Field mustard	nucleus	50.86	54.6
CDY32440	Canola	cytosol	48.57	54.49
CDY25859	Canola	cytosol	48.57	54.49
AT5G03660.1	Thale cress	nucleus	53.14	53.76
CDY70153	Canola	nucleus, plastid	53.71	53.71
CDX71428	Canola	cytosol	50.86	52.66
CDY10366	Canola	nucleus	52.0	52.6
CDX70295	Canola	nucleus	52.0	52.6
PGSC0003DMT400050208	Potato	cytosol	48.57	52.15
CDY04510	Canola	cytosol, nucleus, plastid	50.29	52.07
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	51.43	51.72
AT2G27740.1	Thale cress	nucleus	51.43	51.72
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	51.43	51.72
AT3G52920.1	Thale cress	nucleus	53.14	51.67
CDY43720	Canola	nucleus	51.43	51.43
Solyc11g007330.1.1	Tomato	nucleus	48.0	51.22
AT3G52900.1	Thale cress	cytosol	47.43	50.61
CDX84559	Canola	cytosol, nucleus, plastid	50.29	50.0
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	50.29	50.0
AT2G36410.1	Thale cress	nucleus, plastid	55.43	49.74
VIT_13s0074g00640.t01	Wine grape	cytosol	54.86	49.74
AT2G36355.1	Thale cress	cytosol, extracellular, nucleus	44.0	49.68
CDY57618	Canola	cytosol, mitochondrion, nucleus	49.71	49.43
CDX79677	Canola	cytosol, mitochondrion, nucleus	49.71	49.43
CDY43719	Canola	plastid	53.71	49.21
Bra028539.1-P	Field mustard	cytosol, plastid	46.29	49.09
CDX67543	Canola	cytosol, plastid	46.29	49.09
CDY13335	Canola	cytosol	46.29	49.09
Bra017238.1-P	Field mustard	plastid	53.14	48.95
CDX79678	Canola	cytosol	40.0	45.75
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	47.43	41.09
Bra013746.1-P	Field mustard	nucleus, plastid	20.0	39.77
Bra023068.1-P	Field mustard	nucleus	52.57	32.06
CDY71050	Canola	cytosol	40.0	24.05
Bra027585.1-P	Field mustard	plastid	43.43	16.49

Protein Annotations

EnsemblPlants:GSMUA_Achr8P16080_001	EnsemblPlants:GSMUA_Achr8T16080_001	EnsemblPlantsGene:GSMUA_Achr8G16080_001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF6	PFAM:PF04949	SEG:seg	UniParc:UPI0002949527	UniProt:M0TQW1	MapMan:35.2

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G16080_001]

Coordinates

chr8:-:13880323..13881212

Molecular Weight (calculated)

20382.3 Da

IEP (calculated)

9.090

GRAVY (calculated)

-1.078

Length

175 amino acids

Sequence
(BLAST)

001: MQSPTPPAQE QQQQQHLVLR IRNSAHSHRE SASEEEREDE EASRTALSTF RAKEEEIERK KMEVREKVFA QLGRVEEESK RLAVIQKELE AIADPTRKEV
101: SAIRKKIDAV NRELKPLGHN CLKKEKEYKE ALEAFNGKNR EKAQLVNRLI ELVSESERLR MKKLEELGKT VDSLR

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.