Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92044 | Soybean | nucleus | 95.93 | 97.63 |
| KRG96151 | Soybean | nucleus | 62.21 | 64.07 |
| KRH67862 | Soybean | nucleus | 62.21 | 64.07 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 56.4 | 58.79 |
| CDX67543 | Canola | cytosol, plastid | 56.4 | 58.79 |
| CDY13335 | Canola | cytosol | 56.4 | 58.79 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 52.91 | 57.23 |
| PGSC0003DMT400050208 | Potato | cytosol | 54.07 | 57.06 |
| Solyc11g007330.1.1 | Tomato | nucleus | 54.07 | 56.71 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 62.79 | 55.96 |
| AT3G52900.1 | Thale cress | cytosol | 52.91 | 55.49 |
| Os04t0408600-01 | Rice | cytosol | 54.07 | 55.03 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 55.81 | 54.86 |
| KRH30497 | Soybean | plastid | 55.81 | 54.86 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 49.42 | 54.84 |
| KRH25180 | Soybean | plastid | 55.81 | 54.55 |
| Zm00001d016683_P001 | Maize | nucleus | 51.16 | 52.69 |
| EES12098 | Sorghum | nucleus | 51.74 | 52.66 |
| Os02t0528100-01 | Rice | cytosol | 52.33 | 51.72 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 50.58 | 51.48 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 50.58 | 51.48 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 50.0 | 50.89 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.58 | 50.88 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 51.16 | 50.87 |
| Zm00001d025338_P001 | Maize | nucleus | 49.42 | 50.0 |
| EES06901 | Sorghum | nucleus | 50.58 | 48.33 |
Protein Annotations
| EMBL:ACUP02006623 | EMBL:BT099220 | EnsemblPlants:KRH34738 | EnsemblPlantsGene:GLYMA_10G202700 | EntrezGene:100794044 | InterPro:GORAB |
| ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 | PFAM:PF04949 | ProteinID:KRH34738 | ProteinID:KRH34738.1 |
| SEG:seg | UniParc:UPI0001B1736B | UniProt:C6TNA2 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr10:-:43404189..43406246
Molecular Weight (calculated)
20116.4 Da
IEP (calculated)
5.310
GRAVY (calculated)
-0.828
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVCSNREE MQKMKNLGSI GSSGRLSAEE YEDEEISKLA ISTFQSKEEE IERKKTEVRE KVELQLGRAE EETRRLAHIW EELEVLDDPM RKEVAMVRKK
101: IDLANKDLKP LGLNFQKKEK EYKEALEAFN EKNKEKAHLV ATLVEMLTES ERLRMKKLEE LCKIIESMSL KQ
101: IDLANKDLKP LGLNFQKKEK EYKEALEAFN EKNKEKAHLV ATLVEMLTES ERLRMKKLEE LCKIIESMSL KQ
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
Arabidopsis Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.