Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13335 | Canola | cytosol | 84.76 | 84.24 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 84.15 | 83.64 |
| CDX67543 | Canola | cytosol, plastid | 84.15 | 83.64 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 71.34 | 75.48 |
| PGSC0003DMT400050208 | Potato | cytosol | 54.27 | 54.6 |
| KRG92044 | Soybean | nucleus | 56.1 | 54.44 |
| Solyc11g007330.1.1 | Tomato | nucleus | 53.05 | 53.05 |
| KRH34738 | Soybean | cytosol | 55.49 | 52.91 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 50.61 | 52.2 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 57.32 | 48.7 |
| AT2G27740.1 | Thale cress | nucleus | 50.61 | 47.7 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 50.61 | 47.43 |
| EES12098 | Sorghum | nucleus | 48.78 | 47.34 |
| Os04t0408600-01 | Rice | cytosol | 48.78 | 47.34 |
| Zm00001d016683_P001 | Maize | nucleus | 46.95 | 46.11 |
| Zm00001d025338_P001 | Maize | nucleus | 47.56 | 45.88 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 46.95 | 45.56 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 46.95 | 45.56 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.95 | 45.03 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 46.34 | 44.97 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 48.17 | 44.38 |
| Os02t0528100-01 | Rice | cytosol | 46.95 | 44.25 |
| AT5G03660.1 | Thale cress | nucleus | 45.73 | 43.35 |
| EES06901 | Sorghum | nucleus | 47.56 | 43.33 |
| AT3G52920.1 | Thale cress | nucleus | 45.73 | 41.67 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 43.9 | 41.62 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 44.51 | 37.44 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824456 | UniProt:A0A178VKY3 | ProteinID:AEE79007.1 | EMBL:AK229551 | ArrayExpress:AT3G52900 |
| EnsemblPlantsGene:AT3G52900 | RefSeq:AT3G52900 | TAIR:AT3G52900 | RefSeq:AT3G52900-TAIR-G | EnsemblPlants:AT3G52900.1 | TAIR:AT3G52900.1 |
| Unigene:At.35249 | ProteinID:CAB86894.1 | ncoils:Coil | InterPro:GORAB | RefSeq:NP_190858.1 | ProteinID:OAP06516.1 |
| PFAM:PF04949 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 |
| UniProt:Q9LFA1 | UniParc:UPI00000A3C78 | : | : | : | : |
Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
Coordinates
chr3:+:19613078..19614027
Molecular Weight (calculated)
18864.8 Da
IEP (calculated)
7.272
GRAVY (calculated)
-0.834
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.