Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0528100-01 | Rice | cytosol | 78.44 | 75.29 |
| EES06901 | Sorghum | nucleus | 78.44 | 72.78 |
| CDY69705 | Canola | cytosol | 10.18 | 70.83 |
| Zm00001d025338_P001 | Maize | nucleus | 68.86 | 67.65 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 58.68 | 61.64 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 64.07 | 61.14 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 62.87 | 61.05 |
| KRG96151 | Soybean | nucleus | 59.88 | 59.88 |
| KRH67862 | Soybean | nucleus | 59.28 | 59.28 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 58.68 | 59.04 |
| Bra017239.1-P | Field mustard | cytosol | 44.31 | 56.92 |
| CDY27436 | Canola | cytosol | 35.33 | 56.73 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 58.68 | 56.65 |
| Bra012002.1-P | Field mustard | nucleus | 55.09 | 56.44 |
| KRH25180 | Soybean | plastid | 58.08 | 55.11 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 55.69 | 55.03 |
| KRH30497 | Soybean | plastid | 57.48 | 54.86 |
| CDX71428 | Canola | cytosol | 55.09 | 54.44 |
| PGSC0003DMT400068276 | Potato | nucleus | 56.29 | 54.34 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 55.09 | 54.12 |
| Solyc11g066970.1.1 | Tomato | nucleus | 55.69 | 54.07 |
| Bra028542.1-P | Field mustard | nucleus | 50.9 | 53.8 |
| CDY13331 | Canola | nucleus | 52.1 | 53.7 |
| Solyc09g009210.2.1 | Tomato | nucleus | 53.29 | 53.61 |
| Solyc10g083520.1.1 | Tomato | plastid | 54.49 | 53.53 |
| CDX67549 | Canola | nucleus | 50.9 | 53.46 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 56.89 | 53.37 |
| PGSC0003DMT400007017 | Potato | nucleus | 52.69 | 53.01 |
| CDY60156 | Canola | cytosol, plastid | 56.29 | 52.81 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 56.29 | 52.81 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 54.49 | 52.3 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 54.49 | 52.3 |
| AT2G27740.1 | Thale cress | nucleus | 53.89 | 51.72 |
| KRG92044 | Soybean | nucleus | 52.1 | 51.48 |
| KRH34738 | Soybean | cytosol | 52.69 | 51.16 |
| CDX78133 | Canola | nucleus | 50.3 | 50.91 |
| Bra006959.1-P | Field mustard | nucleus | 50.3 | 50.91 |
| CDY66899 | Canola | nucleus | 52.1 | 50.58 |
| CDY00898 | Canola | cytosol, plastid | 53.89 | 50.56 |
| CDX73594 | Canola | nucleus | 49.7 | 50.0 |
| Bra001292.1-P | Field mustard | nucleus | 53.29 | 49.44 |
| CDX74002 | Canola | nucleus | 52.69 | 48.89 |
| CDY10366 | Canola | nucleus | 50.3 | 48.55 |
| CDX70295 | Canola | nucleus | 50.3 | 48.55 |
| AT5G03660.1 | Thale cress | nucleus | 50.3 | 48.55 |
| CDY17934 | Canola | cytosol | 43.11 | 48.0 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 47.31 | 47.88 |
| CDY13335 | Canola | cytosol | 47.31 | 47.88 |
| CDX67543 | Canola | cytosol, plastid | 47.31 | 47.88 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 44.31 | 47.74 |
| AT3G52900.1 | Thale cress | cytosol | 46.11 | 46.95 |
| PGSC0003DMT400050208 | Potato | cytosol | 45.51 | 46.63 |
| AT3G52920.1 | Thale cress | nucleus | 49.7 | 46.11 |
| Solyc11g007330.1.1 | Tomato | nucleus | 44.91 | 45.73 |
| CDY70153 | Canola | nucleus, plastid | 47.9 | 45.71 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 47.31 | 44.89 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 47.31 | 44.89 |
| CDY25859 | Canola | cytosol | 41.92 | 44.87 |
| CDY32440 | Canola | cytosol | 41.92 | 44.87 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 51.5 | 44.56 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 46.11 | 43.75 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 46.11 | 43.75 |
| Bra017238.1-P | Field mustard | plastid | 49.1 | 43.16 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 50.3 | 43.08 |
| CDY43719 | Canola | plastid | 49.1 | 42.93 |
| CDY43720 | Canola | nucleus | 44.91 | 42.86 |
| CDX79678 | Canola | cytosol | 36.53 | 39.87 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 45.51 | 37.62 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 16.17 | 30.68 |
| Bra023068.1-P | Field mustard | nucleus | 49.1 | 28.57 |
| CDY71050 | Canola | cytosol | 34.73 | 19.93 |
| Bra027585.1-P | Field mustard | plastid | 37.72 | 13.67 |
Protein Annotations
| EnsemblPlants:Zm00001d016683_P001 | EnsemblPlants:Zm00001d016683_T001 | EnsemblPlantsGene:Zm00001d016683 | InterPro:GORAB | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF6 |
| PFAM:PF04949 | ProteinID:AQK71436.1 | SEG:seg | UniParc:UPI000221DCC2 | UniProt:A0A1D6H9Q3 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5:-:172410770..172412111
Molecular Weight (calculated)
19562.6 Da
IEP (calculated)
7.896
GRAVY (calculated)
-0.865
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MECSGKEEQQ MQIVCVRSAS TGGGEEVGEW AEQSSRSALS LFKEKEEEIE RKKVEVRDKV FSMLGRVEEE TKRLAFIRQE LELMADPTRR EVDAIRKRID
101: KVNRQLKPLG KTCLKKEKEY KMCLEAYNEK NNEKATLVNR LLELVSESER LRMKKLEELN KTIESLY
101: KVNRQLKPLG KTCLKKEKEY KMCLEAYNEK NNEKATLVNR LLELVSESER LRMKKLEELN KTIESLY
001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
Arabidopsis Description
At2g27740 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.