Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- golgi 1
- plastid 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra035381.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52920.1 | Bra035381.1-P | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78133 | Canola | nucleus | 99.39 | 99.39 |
| Bra028542.1-P | Field mustard | nucleus | 87.27 | 91.14 |
| Bra017239.1-P | Field mustard | cytosol | 62.42 | 79.23 |
| AT3G52920.1 | Thale cress | nucleus | 84.85 | 77.78 |
| Bra017238.1-P | Field mustard | plastid | 80.61 | 70.0 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 74.55 | 69.1 |
| KRH67862 | Soybean | nucleus | 69.7 | 68.86 |
| Bra001292.1-P | Field mustard | nucleus | 73.94 | 67.78 |
| KRG96151 | Soybean | nucleus | 68.48 | 67.66 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 69.7 | 67.65 |
| Solyc10g083520.1.1 | Tomato | plastid | 68.48 | 66.47 |
| PGSC0003DMT400007017 | Potato | nucleus | 66.06 | 65.66 |
| Solyc09g009210.2.1 | Tomato | nucleus | 66.06 | 65.66 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 65.45 | 65.06 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 64.85 | 60.8 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 53.33 | 55.35 |
| Bra012002.1-P | Field mustard | nucleus | 53.94 | 54.6 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 56.97 | 53.71 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 55.76 | 53.18 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 54.55 | 51.72 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 62.42 | 50.99 |
| Zm00001d016683_P001 | Maize | nucleus | 50.91 | 50.3 |
| Os04t0408600-01 | Rice | cytosol | 51.52 | 50.3 |
| Zm00001d025338_P001 | Maize | nucleus | 51.52 | 50.0 |
| EES12098 | Sorghum | nucleus | 50.91 | 49.7 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 26.06 | 48.86 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 49.7 | 48.52 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 49.7 | 48.52 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 49.7 | 48.52 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 49.7 | 47.95 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 47.27 | 47.27 |
| Os02t0528100-01 | Rice | cytosol | 49.7 | 47.13 |
| EES06901 | Sorghum | nucleus | 49.7 | 45.56 |
| Bra023068.1-P | Field mustard | nucleus | 78.18 | 44.95 |
| Bra027585.1-P | Field mustard | plastid | 47.88 | 17.14 |
Protein Annotations
Description
AT3G52920 (E=7e-059) | unknown protein
Coordinates
chrA09:+:26521204..26522276
Molecular Weight (calculated)
19384.4 Da
IEP (calculated)
7.069
GRAVY (calculated)
-0.976
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTDLAQPQ SQQMVSFSFS SQMSREDEEM ARSALSAFRA KEDEIEKRKM EVRERVKIQL GRVEEENRRL ANIREELESM ADPMRKEVSW VRKKIDSVNK
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLLTKLMEM GQLVGESEKL RLKKLEELSM GIQTD
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLLTKLMEM GQLVGESEKL RLKKLEELSM GIQTD
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
Arabidopsis Description
Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.