Factsheet for Bra027585.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013746.1-P
Bra021487.1-P
Bra027585.1-P
Bra029810.1-P
Bra039138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	Bra021487.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra039138.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra013746.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra027585.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra029810.1-P	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71050	Canola	cytosol	60.3	95.53
Bra013746.1-P	Field mustard	nucleus, plastid	14.53	76.14
Bra029810.1-P	Field mustard	cytosol, plastid	24.51	63.48
AT3G09980.1	Thale cress	nucleus, plastid	23.86	61.8
Bra001292.1-P	Field mustard	nucleus	21.26	54.44
Bra028542.1-P	Field mustard	nucleus	17.57	51.27
KRH67862	Soybean	nucleus	18.44	50.9
Bra017239.1-P	Field mustard	cytosol	14.32	50.77
KRG96151	Soybean	nucleus	18.22	50.3
Bra006959.1-P	Field mustard	nucleus	17.14	47.88
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	17.14	46.47
Solyc10g083520.1.1	Tomato	plastid	16.92	45.88
VIT_08s0007g03770.t01	Wine grape	nucleus	16.27	45.18
GSMUA_Achr8P16080_001	Banana	nucleus	16.49	43.43
Solyc09g009210.2.1	Tomato	nucleus	15.62	43.37
PGSC0003DMT400007017	Potato	nucleus	15.62	43.37
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	15.62	40.91
GSMUA_Achr3P18940_001	Banana	nucleus	14.1	40.88
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	17.79	40.59
Bra017238.1-P	Field mustard	plastid	16.7	40.53
GSMUA_Achr2P20290_001	Banana	nucleus	15.18	40.46
Zm00001d025338_P001	Maize	nucleus	14.32	38.82
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	14.32	38.6
HORVU2Hr1G072420.11	Barley	nucleus	14.1	38.46
EES12098	Sorghum	nucleus	14.1	38.46
TraesCS2A01G292600.1	Wheat	nucleus	14.1	38.46
TraesCS2D01G290400.1	Wheat	nucleus	14.1	38.46
Os04t0408600-01	Rice	cytosol	13.88	37.87
Zm00001d016683_P001	Maize	nucleus	13.67	37.72
Bra012002.1-P	Field mustard	nucleus	12.8	36.2
Os02t0528100-01	Rice	cytosol	13.23	35.06
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.23	35.06
EES06901	Sorghum	nucleus	13.02	33.33
Bra028539.1-P	Field mustard	cytosol, plastid	11.28	31.52
Bra023068.1-P	Field mustard	nucleus	18.0	28.92

Protein Annotations

KEGG:00270+4.1.1.50	KEGG:00330+4.1.1.50	Gene3D:3.30.750.44	Gene3D:3.60.90.10	MapMan:35.1	EnsemblPlantsGene:Bra027585
EnsemblPlants:Bra027585.1	EnsemblPlants:Bra027585.1-P	InterPro:ClpP/crotonase-like_dom_sf	ncoils:Coil	InterPro:Cyt_P450_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004014	GO:GO:0005488	GO:GO:0005506	GO:GO:0006597	GO:GO:0008150
GO:GO:0008152	GO:GO:0008295	GO:GO:0009058	GO:GO:0009987	GO:GO:0016705	GO:GO:0020037
GO:GO:0055114	InterPro:GORAB	InterPro:IPR036396	UniProt:M4EFM3	PFAM:PF01536	PFAM:PF04949
PANTHER:PTHR21470	PANTHER:PTHR21470:SF4	InterPro:S-AdoMet_deCO2ase_core	InterPro:S-AdoMet_decarboxylase	SUPFAM:SSF48264	SUPFAM:SSF52096
SUPFAM:SSF56276	UniParc:UPI00025426E7	SEG:seg	:	:	:

Description

AT1G31800 (E=2e-044) CYP97A3, LUT5 | CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding

Coordinates

chrA09:-:13151979..13156138

Molecular Weight (calculated)

52758.4 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.462

Length

461 amino acids

Sequence
(BLAST)

001: MREIQAVETS QPTVAPPAKP SRQLGAQLSG SMSFSSRMSN EDEEMSRTAL SAIMAKEEEI EKNKMEIRER VQAQLGRVEE ETKRLAFIRE ELEGLAEPMR
101: KEVALARKKI DSVNKELKNG LSKLGVPRNV LDLMFDWTGA NEDYLKVPEA KGSIQAVRNE AFFIPIYELF LTYGGIFRLT FGPKSFLIVS DPSIAKHILK
201: DNAKAYSKQT MVEMFPLRSA DAAYGKIKAM LSTLGDPFTR IISPKEYQSF RIGSDGNLQG VGLFINSEPE TGRLKLRPDL SLRALEASQR SPHHRAFPDS
301: PCSSNDMLRS SESKIEERVR QILFRLSNDM LRSSESKIEE RVRQILFRLQ YLSLFRYVHL NPEIYINPKK RQPSGWEVHS TGIHAKTRYI PSFLFMKRSL
401: SRERFCQDQD FHFSSSLTTE DGFNYAIVED VGYEFKTIQL NQLVRRVLSC FDPKKFSVAV H

Best Arabidopsis Sequence Match ( AT1G31800.1 )
(BLAST)

001: MAMAFPLSYT PTITVKPVTY SRRSNFVVFS SSSNGRDPLE ENSVPNGVKS LEKLQEEKRR AELSARIASG AFTVRKSSFP STVKNGLSKI GIPSNVLDFM
101: FDWTGSDQDY PKVPEAKGSI QAVRNEAFFI PLYELFLTYG GIFRLTFGPK SFLIVSDPSI AKHILKDNAK AYSKGILAEI LDFVMGKGLI PADGEIWRRR
201: RRAIVPALHQ KYVAAMISLF GEASDRLCQK LDAAALKGEE VEMESLFSRL TLDIIGKAVF NYDFDSLTND TGVIEAVYTV LREAEDRSVS PIPVWDIPIW
301: KDISPRQRKV ATSLKLINDT LDDLIATCKR MVEEEELQFH EEYMNERDPS ILHFLLASGD DVSSKQLRDD LMTMLIAGHE TSAAVLTWTF YLLTTEPSVV
401: AKLQEEVDSV IGDRFPTIQD MKKLKYTTRV MNESLRLYPQ PPVLIRRSID NDILGEYPIK RGEDIFISVW NLHRSPLHWD DAEKFNPERW PLDGPNPNET
501: NQNFSYLPFG GGPRKCIGDM FASFENVVAI AMLIRRFNFQ IAPGAPPVKM TTGATIHTTE GLKLTVTKRT KPLDIPSVPI LPMDTSRDEV SSALS

Arabidopsis Description

CYP97A3Protein LUTEIN DEFICIENT 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q93VK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.