Factsheet for GSMUA_Achr3P18940_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr1P24640_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P17470_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36410.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G36410.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr1P24640_001	AT3G01180.1	21798944
AT3G09980.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT3G09980.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT3G52920.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT3G52920.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69705	Canola	cytosol	11.32	75.0
VIT_06s0061g01440.t01	Wine grape	nucleus	67.3	62.21
VIT_08s0007g03770.t01	Wine grape	nucleus	63.52	60.84
GSMUA_Achr2P20290_001	Banana	nucleus	65.41	60.12
GSMUA_Achr8P16080_001	Banana	nucleus	66.04	60.0
KRG96151	Soybean	nucleus	62.89	59.88
CDY27436	Canola	cytosol	38.99	59.62
KRH67862	Soybean	nucleus	62.26	59.28
Bra017239.1-P	Field mustard	cytosol	48.43	59.23
Solyc11g066970.1.1	Tomato	nucleus	63.52	58.72
Zm00001d016683_P001	Maize	nucleus	61.64	58.68
Os04t0408600-01	Rice	cytosol	62.26	58.58
Bra028542.1-P	Field mustard	nucleus	57.86	58.23
CDY13331	Canola	nucleus	58.49	57.41
EES12098	Sorghum	nucleus	61.01	57.4
HORVU2Hr1G072420.11	Barley	nucleus	61.01	57.4
TraesCS2A01G292600.1	Wheat	nucleus	61.01	57.4
TraesCS2D01G290400.1	Wheat	nucleus	61.01	57.4
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.64	57.31
KRH30497	Soybean	plastid	62.89	57.14
CDX67549	Canola	nucleus	56.6	56.6
Zm00001d025338_P001	Maize	nucleus	60.38	56.47
KRH25180	Soybean	plastid	62.26	56.25
PGSC0003DMT400007017	Potato	nucleus	58.49	56.02
Solyc10g083520.1.1	Tomato	plastid	59.75	55.88
PGSC0003DMT400068276	Potato	nucleus	60.38	55.49
Solyc09g009210.2.1	Tomato	nucleus	57.86	55.42
Bra012002.1-P	Field mustard	nucleus	55.97	54.6
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	57.86	54.12
KRG92044	Soybean	nucleus	57.23	53.85
AT2G27740.1	Thale cress	nucleus	58.49	53.45
Bra006959.1-P	Field mustard	nucleus	55.35	53.33
CDX78133	Canola	nucleus	55.35	53.33
KRH34738	Soybean	cytosol	57.23	52.91
Os02t0528100-01	Rice	cytosol	57.86	52.87
CDY60156	Canola	cytosol, plastid	59.12	52.81
Bra029810.1-P	Field mustard	cytosol, plastid	59.12	52.81
CDY13335	Canola	cytosol	54.72	52.73
Bra028539.1-P	Field mustard	cytosol, plastid	54.72	52.73
CDX67543	Canola	cytosol, plastid	54.72	52.73
CDY04510	Canola	cytosol, nucleus, plastid	55.97	52.66
CDX71428	Canola	cytosol	55.97	52.66
CDX73594	Canola	nucleus	54.72	52.41
CDY66899	Canola	nucleus	56.6	52.33
AT3G09980.1	Thale cress	nucleus, plastid	58.49	52.25
EES06901	Sorghum	nucleus	59.12	52.22
PGSC0003DMT400050208	Potato	cytosol	52.83	51.53
CDY17934	Canola	cytosol	48.43	51.33
CDX74002	Canola	nucleus	57.86	51.11
Bra001292.1-P	Field mustard	nucleus	57.86	51.11
AT2G36355.1	Thale cress	cytosol, extracellular, nucleus	49.69	50.97
AT3G52900.1	Thale cress	cytosol	52.2	50.61
Solyc11g007330.1.1	Tomato	nucleus	52.2	50.61
CDY00898	Canola	cytosol, plastid	56.6	50.56
AT5G03660.1	Thale cress	nucleus	54.72	50.29
AT3G52920.1	Thale cress	nucleus	56.6	50.0
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	54.09	49.43
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	54.09	49.43
CDY43720	Canola	nucleus	53.46	48.57
CDY10366	Canola	nucleus	52.83	48.55
CDX70295	Canola	nucleus	52.83	48.55
CDX84559	Canola	cytosol, nucleus, plastid	52.83	47.73
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	52.83	47.73
VIT_13s0074g00640.t01	Wine grape	cytosol	57.86	47.67
CDY32440	Canola	cytosol	46.54	47.44
CDY25859	Canola	cytosol	46.54	47.44
CDY57618	Canola	cytosol, mitochondrion, nucleus	52.2	47.16
CDX79677	Canola	cytosol, mitochondrion, nucleus	52.2	47.16
CDY70153	Canola	nucleus, plastid	50.94	46.29
AT2G36410.1	Thale cress	nucleus, plastid	55.97	45.64
Bra017238.1-P	Field mustard	plastid	53.46	44.74
CDY43719	Canola	plastid	53.46	44.5
CDX79678	Canola	cytosol	42.77	44.44
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	48.43	38.12
Bra013746.1-P	Field mustard	nucleus, plastid	16.98	30.68
Bra023068.1-P	Field mustard	nucleus	55.35	30.66
CDY71050	Canola	cytosol	39.62	21.65
Bra027585.1-P	Field mustard	plastid	40.88	14.1

Protein Annotations

EnsemblPlants:GSMUA_Achr3P18940_001	EnsemblPlants:GSMUA_Achr3T18940_001	EnsemblPlantsGene:GSMUA_Achr3G18940_001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF4	PFAM:PF04949	UniParc:UPI000294F533	UniProt:M0SFW0	MapMan:35.2	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G18940_001]

Coordinates

chr3:-:20313293..20314084

Molecular Weight (calculated)

18680.5 Da

IEP (calculated)

6.568

GRAVY (calculated)

-0.967

Length

159 amino acids

Sequence
(BLAST)

001: MEEGQQQHIR QIKNSRLMEE DGEEESPRSA LSSFQAREEE IERKKMEVKE KVFAQLCRVE EEAKHLAMIR GELEAMVDPT RNEAAALRKK IDAVNRALKP
101: LGQSCLRKEK EYKEALEAFN EKNKEKSQLV AKLMELVSES ERLRMRKLEE LNKSIDFFR

Best Arabidopsis Sequence Match ( AT3G52920.2 )
(BLAST)

001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN

Arabidopsis Description

Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.