Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27436 | Canola | cytosol | 60.0 | 86.54 |
| CDY32440 | Canola | cytosol | 79.33 | 76.28 |
| CDY25859 | Canola | cytosol | 79.33 | 76.28 |
| CDY00898 | Canola | cytosol, plastid | 77.33 | 65.17 |
| CDY60156 | Canola | cytosol, plastid | 75.33 | 63.48 |
| CDY70153 | Canola | nucleus, plastid | 74.0 | 63.43 |
| CDY66899 | Canola | nucleus | 72.67 | 63.37 |
| CDX67549 | Canola | nucleus | 66.67 | 62.89 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 74.0 | 62.36 |
| CDY13331 | Canola | nucleus | 66.67 | 61.73 |
| KRH67862 | Soybean | nucleus | 66.67 | 59.88 |
| CDX74002 | Canola | nucleus | 71.33 | 59.44 |
| KRG96151 | Soybean | nucleus | 66.0 | 59.28 |
| CDX78133 | Canola | nucleus | 64.0 | 58.18 |
| CDX73594 | Canola | nucleus | 64.0 | 57.83 |
| CDY10366 | Canola | nucleus | 63.33 | 54.91 |
| CDX70295 | Canola | nucleus | 63.33 | 54.91 |
| Solyc09g009210.2.1 | Tomato | nucleus | 60.67 | 54.82 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 60.67 | 54.82 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 62.0 | 54.71 |
| CDY43720 | Canola | nucleus | 63.33 | 54.29 |
| PGSC0003DMT400007017 | Potato | nucleus | 60.0 | 54.22 |
| Solyc10g083520.1.1 | Tomato | plastid | 61.33 | 54.12 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 60.67 | 51.7 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 60.67 | 51.7 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 60.67 | 51.7 |
| CDY43719 | Canola | plastid | 63.33 | 49.74 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 58.0 | 49.71 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 51.33 | 48.43 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 27.33 | 46.59 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 53.33 | 46.24 |
| Os04t0408600-01 | Rice | cytosol | 51.33 | 45.56 |
| CDX79678 | Canola | cytosol | 45.33 | 44.44 |
| EES12098 | Sorghum | nucleus | 49.33 | 43.79 |
| CDX71428 | Canola | cytosol | 48.67 | 43.2 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 48.67 | 43.2 |
| Zm00001d016683_P001 | Maize | nucleus | 48.0 | 43.11 |
| Zm00001d025338_P001 | Maize | nucleus | 48.67 | 42.94 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 48.0 | 42.6 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 48.0 | 42.6 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 48.0 | 42.6 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 48.0 | 42.11 |
| Os02t0528100-01 | Rice | cytosol | 47.33 | 40.8 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 47.33 | 40.8 |
| EES06901 | Sorghum | nucleus | 47.33 | 39.44 |
| CDY13335 | Canola | cytosol | 43.33 | 39.39 |
| CDX67543 | Canola | cytosol, plastid | 43.33 | 39.39 |
| CDY71050 | Canola | cytosol | 55.33 | 28.52 |
| CDY69705 | Canola | cytosol | 3.33 | 20.83 |
Protein Annotations
| EnsemblPlants:CDY17934 | EnsemblPlantsGene:GSBRNA2T00002287001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDY17934 | ProteinID:CDY17934.1 | SEG:seg | UniParc:UPI0004EEBCEC | UniProt:A0A078FXP2 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC04g02850DBnaC04g02850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXP2]
Coordinates
chrLK032079:-:662001..663576
Molecular Weight (calculated)
17499.1 Da
IEP (calculated)
6.578
GRAVY (calculated)
-0.809
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNEDEEMSR TALSAIRAKE EEIEKNKMEI RERVQAQLGR VEEETKRLAL IREELEGLAE PMRKEVALAR KKIDSVNKEL KPLGHTVQKK EREYKEALEA
101: FNEKNREKVQ LITKLTEVSQ LILKSFSFFY LLNIVIGDSE EKAHARQKAE
101: FNEKNREKVQ LITKLTEVSQ LILKSFSFFY LLNIVIGDSE EKAHARQKAE
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.