Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52920.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT3G52920.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78133 | Canola | nucleus | 96.99 | 97.58 |
| CDX67549 | Canola | nucleus | 89.76 | 93.71 |
| CDY13331 | Canola | nucleus | 88.55 | 90.74 |
| CDY69705 | Canola | cytosol | 11.45 | 79.17 |
| AT3G52920.1 | Thale cress | nucleus | 84.34 | 77.78 |
| CDY27436 | Canola | cytosol | 47.59 | 75.96 |
| CDY66899 | Canola | nucleus | 72.89 | 70.35 |
| CDY60156 | Canola | cytosol, plastid | 74.7 | 69.66 |
| CDY43719 | Canola | plastid | 78.92 | 68.59 |
| CDY00898 | Canola | cytosol, plastid | 72.89 | 67.98 |
| KRH67862 | Soybean | nucleus | 68.07 | 67.66 |
| CDX74002 | Canola | nucleus | 72.89 | 67.22 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 68.67 | 67.06 |
| KRG96151 | Soybean | nucleus | 66.87 | 66.47 |
| PGSC0003DMT400007017 | Potato | nucleus | 66.27 | 66.27 |
| Solyc09g009210.2.1 | Tomato | nucleus | 66.27 | 66.27 |
| Solyc10g083520.1.1 | Tomato | plastid | 67.47 | 65.88 |
| CDY70153 | Canola | nucleus, plastid | 68.67 | 65.14 |
| CDY25859 | Canola | cytosol | 60.84 | 64.74 |
| CDY32440 | Canola | cytosol | 60.84 | 64.74 |
| CDY10366 | Canola | nucleus | 67.47 | 64.74 |
| CDX70295 | Canola | nucleus | 67.47 | 64.74 |
| CDY17934 | Canola | cytosol | 57.83 | 64.0 |
| CDY43720 | Canola | nucleus | 67.47 | 64.0 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 63.86 | 63.86 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 64.46 | 60.8 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 64.46 | 60.8 |
| CDX79678 | Canola | cytosol | 56.02 | 60.78 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 63.86 | 60.23 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 52.41 | 54.72 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 57.23 | 54.29 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 55.42 | 53.18 |
| CDX71428 | Canola | cytosol | 53.61 | 52.66 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 53.01 | 52.07 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 54.22 | 51.72 |
| Os04t0408600-01 | Rice | cytosol | 51.81 | 50.89 |
| Zm00001d025338_P001 | Maize | nucleus | 51.81 | 50.59 |
| EES12098 | Sorghum | nucleus | 51.2 | 50.3 |
| Zm00001d016683_P001 | Maize | nucleus | 50.0 | 49.7 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 50.0 | 49.11 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 50.0 | 49.11 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 50.0 | 49.11 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.0 | 48.54 |
| Os02t0528100-01 | Rice | cytosol | 50.0 | 47.7 |
| CDY13335 | Canola | cytosol | 46.99 | 47.27 |
| CDX67543 | Canola | cytosol, plastid | 46.99 | 47.27 |
| EES06901 | Sorghum | nucleus | 48.8 | 45.0 |
| CDY71050 | Canola | cytosol | 44.58 | 25.43 |
Protein Annotations
| EnsemblPlants:CDX73594 | EnsemblPlantsGene:GSBRNA2T00109149001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDX73594 | ProteinID:CDX73594.1 | SEG:seg | UniParc:UPI0004EE5F7E | MapMan:35.2 |
Description
BnaC08g24090D
Coordinates
chrLK031799:-:1482243..1483766
Molecular Weight (calculated)
19519.4 Da
IEP (calculated)
5.588
GRAVY (calculated)
-1.087
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTDPSQPQ SQQMMSFSFS SQMSREDEEM ARSALSAFRA KEDEIEKRKM EVRERVKTQL GRVEEENRRL ANIREELESM ADPMRKEVSW VRKKIDSVNK
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLLTKLMEE MGQLVGESEK LRLKKLEELS MGVQTD
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLLTKLMEE MGQLVGESEK LRLKKLEELS MGVQTD
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME MGQLVGESEK LRLKKLDELS RSIDTESESI SQDKTIPIKN
Arabidopsis Description
Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.