Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012002.1-P | Field mustard | nucleus | 95.86 | 99.39 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 97.63 | 97.63 |
| AT2G27740.1 | Thale cress | nucleus | 91.12 | 88.51 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 88.17 | 85.63 |
| CDY69705 | Canola | cytosol | 10.65 | 75.0 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 68.05 | 66.86 |
| KRH30497 | Soybean | plastid | 68.05 | 65.71 |
| KRH25180 | Soybean | plastid | 67.46 | 64.77 |
| CDY13331 | Canola | nucleus | 55.62 | 58.02 |
| CDY27436 | Canola | cytosol | 35.5 | 57.69 |
| CDX67549 | Canola | nucleus | 53.85 | 57.23 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 52.66 | 55.97 |
| Solyc11g066970.1.1 | Tomato | nucleus | 56.21 | 55.23 |
| Zm00001d016683_P001 | Maize | nucleus | 54.44 | 55.09 |
| CDX78133 | Canola | nucleus | 53.25 | 54.55 |
| PGSC0003DMT400068276 | Potato | nucleus | 55.62 | 54.34 |
| CDX73594 | Canola | nucleus | 52.66 | 53.61 |
| CDY66899 | Canola | nucleus | 53.85 | 52.91 |
| CDY60156 | Canola | cytosol, plastid | 55.03 | 52.25 |
| EES12098 | Sorghum | nucleus | 51.48 | 51.48 |
| Zm00001d025338_P001 | Maize | nucleus | 51.48 | 51.18 |
| CDY00898 | Canola | cytosol, plastid | 53.85 | 51.12 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 50.89 | 50.89 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 50.89 | 50.89 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 51.48 | 50.88 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 52.66 | 50.86 |
| CDX74002 | Canola | nucleus | 53.85 | 50.56 |
| Os04t0408600-01 | Rice | cytosol | 50.3 | 50.3 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 50.3 | 50.3 |
| CDX70295 | Canola | nucleus | 50.89 | 49.71 |
| CDY10366 | Canola | nucleus | 50.89 | 49.71 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 50.3 | 49.13 |
| CDY17934 | Canola | cytosol | 43.2 | 48.67 |
| CDY43719 | Canola | plastid | 54.44 | 48.17 |
| CDY43720 | Canola | nucleus | 49.7 | 48.0 |
| EES06901 | Sorghum | nucleus | 50.89 | 47.78 |
| Os02t0528100-01 | Rice | cytosol | 49.11 | 47.7 |
| CDY25859 | Canola | cytosol | 43.2 | 46.79 |
| CDY32440 | Canola | cytosol | 43.2 | 46.79 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 48.52 | 46.59 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 48.52 | 46.59 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 48.52 | 46.59 |
| CDY70153 | Canola | nucleus, plastid | 47.93 | 46.29 |
| CDY13335 | Canola | cytosol | 44.38 | 45.45 |
| CDX67543 | Canola | cytosol, plastid | 44.38 | 45.45 |
| CDX79678 | Canola | cytosol | 40.83 | 45.1 |
| CDY71050 | Canola | cytosol | 32.54 | 18.9 |
Protein Annotations
| EnsemblPlants:CDX71428 | EnsemblPlantsGene:GSBRNA2T00148271001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDX71428 | ProteinID:CDX71428.1 | SEG:seg | UniParc:UPI0004EEE721 | MapMan:35.2 |
Description
BnaC04g16630D
Coordinates
chrLK031793:-:797609..798525
Molecular Weight (calculated)
19793.9 Da
IEP (calculated)
8.446
GRAVY (calculated)
-0.879
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTRQMLEQ PQSPFIQRTI SINGSPMVDD REEELSRSAL ALYKEKEDEI ERRKMEVRDR VQKKLGLAEE ATRRLAEIRE ELEALTDPMR KEVSAIRKRV
101: DAINRELKPL GQSCQRKERE FKEALEAYNE KNKEKAIFVS KLVELVTESE KLRMTKLDEL SKSIDVSLR
101: DAINRELKPL GQSCQRKERE FKEALEAYNE KNKEKAIFVS KLVELVTESE KLRMTKLDEL SKSIDVSLR
001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
Arabidopsis Description
At2g27740 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.