CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol, nucleus, mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
AT2G27740.1	Thale cress	nucleus	88.51	88.51
CDX71428	Canola	cytosol	85.63	88.17
CDY04510	Canola	cytosol, nucleus, plastid	84.48	86.98
CDY69705	Canola	cytosol	9.77	70.83
VIT_06s0061g01440.t01	Wine grape	nucleus	68.39	69.19
KRH30497	Soybean	plastid	66.09	65.71
KRH25180	Soybean	plastid	65.52	64.77
Solyc11g066970.1.1	Tomato	nucleus	56.32	56.98
CDY13331	Canola	nucleus	52.87	56.79
CDY27436	Canola	cytosol	33.91	56.73
CDX67549	Canola	nucleus	51.72	56.6
PGSC0003DMT400068276	Potato	nucleus	55.75	56.07
CDX78133	Canola	nucleus	51.72	54.55
Zm00001d016683_P001	Maize	nucleus	52.3	54.49
CDX73594	Canola	nucleus	51.72	54.22
GSMUA_Achr3P18940_001	Banana	nucleus	49.43	54.09
EES12098	Sorghum	nucleus	51.72	53.25
CDY60156	Canola	cytosol, plastid	54.02	52.81
Os04t0408600-01	Rice	cytosol	51.15	52.66
Zm00001d025338_P001	Maize	nucleus	51.15	52.35
CDY66899	Canola	nucleus	51.72	52.33
TraesCS2D01G290400.1	Wheat	nucleus	50.0	51.48
TraesCS2A01G292600.1	Wheat	nucleus	50.0	51.48
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.57	51.46
GSMUA_Achr8P16080_001	Banana	nucleus	51.72	51.43
CDY00898	Canola	cytosol, plastid	52.3	51.12
HORVU2Hr1G072420.11	Barley	nucleus	49.43	50.89
CDX74002	Canola	nucleus	52.3	50.56
CDX70295	Canola	nucleus	49.43	49.71
CDY10366	Canola	nucleus	49.43	49.71
GSMUA_Achr2P20290_001	Banana	nucleus	48.85	49.13
EES06901	Sorghum	nucleus	50.57	48.89
Os02t0528100-01	Rice	cytosol	48.28	48.28
CDY43720	Canola	nucleus	48.28	48.0
CDX84559	Canola	cytosol, nucleus, plastid	48.28	47.73
CDX79677	Canola	cytosol, mitochondrion, nucleus	48.28	47.73
CDY57618	Canola	cytosol, mitochondrion, nucleus	48.28	47.73
CDY43719	Canola	plastid	52.3	47.64
CDY17934	Canola	cytosol	40.8	47.33
CDY13335	Canola	cytosol	44.83	47.27
CDX67543	Canola	cytosol, plastid	44.83	47.27
CDY70153	Canola	nucleus, plastid	47.13	46.86
CDY25859	Canola	cytosol	40.8	45.51
CDY32440	Canola	cytosol	40.8	45.51
CDX79678	Canola	cytosol	39.66	45.1
CDY71050	Canola	cytosol	31.03	18.56

Protein Annotations

EnsemblPlants:CDY30533	EnsemblPlantsGene:GSBRNA2T00045254001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470	PANTHER:PTHR21470:SF4
PFAM:PF04949	ProteinID:CDY30533	ProteinID:CDY30533.1	SEG:seg	UniParc:UPI0002543A7C	UniProt:A0A078H188
MapMan:35.2	:	:	:	:	:

Description

BnaA04g16000DBnaA04g16000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H188]

Coordinates

chrLK032254:-:271505..272445

Molecular Weight (calculated)

20195.4 Da

IEP (calculated)

9.765

GRAVY (calculated)

-0.820

Length

174 amino acids

Sequence
(BLAST)

001: MATTRQILQQ PQSPFIQRIK SSGTISINGS PMNDDKEEDF SRSSLALFKA KEDEIERRKM EVRDRVQTKL GLAEEATRRL AEIREELESL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ KKEKEFKEAL EAYNEKNKEK AMFVSKLVEL VTESEKLRMT KLEKLSKIID ISLH

Best Arabidopsis Sequence Match ( AT2G27740.1 )
(BLAST)

001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR

Arabidopsis Description

At2g27740 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.