Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25859 | Canola | cytosol | 100.0 | 100.0 |
| CDY27436 | Canola | cytosol | 56.41 | 84.62 |
| CDY17934 | Canola | cytosol | 76.28 | 79.33 |
| CDY00898 | Canola | cytosol, plastid | 78.85 | 69.1 |
| CDY66899 | Canola | nucleus | 73.72 | 66.86 |
| CDY70153 | Canola | nucleus, plastid | 75.0 | 66.86 |
| CDY60156 | Canola | cytosol, plastid | 76.28 | 66.85 |
| CDX67549 | Canola | nucleus | 67.31 | 66.04 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 75.0 | 65.73 |
| CDY13331 | Canola | nucleus | 67.31 | 64.81 |
| CDX74002 | Canola | nucleus | 73.08 | 63.33 |
| KRH67862 | Soybean | nucleus | 66.67 | 62.28 |
| CDX78133 | Canola | nucleus | 64.74 | 61.21 |
| KRG96151 | Soybean | nucleus | 65.38 | 61.08 |
| CDX73594 | Canola | nucleus | 64.74 | 60.84 |
| CDY10366 | Canola | nucleus | 64.74 | 58.38 |
| CDX70295 | Canola | nucleus | 64.74 | 58.38 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 60.9 | 55.88 |
| PGSC0003DMT400007017 | Potato | nucleus | 58.97 | 55.42 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 58.97 | 55.42 |
| Solyc09g009210.2.1 | Tomato | nucleus | 58.97 | 55.42 |
| Solyc10g083520.1.1 | Tomato | plastid | 60.26 | 55.29 |
| CDY43720 | Canola | nucleus | 61.54 | 54.86 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 30.77 | 54.55 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 58.97 | 52.27 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 58.97 | 52.27 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 58.97 | 52.27 |
| CDY43719 | Canola | plastid | 62.82 | 51.31 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 54.49 | 48.57 |
| CDX79678 | Canola | cytosol | 46.15 | 47.06 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 51.92 | 46.82 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 47.44 | 46.54 |
| Os04t0408600-01 | Rice | cytosol | 48.72 | 44.97 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 46.79 | 43.2 |
| CDX71428 | Canola | cytosol | 46.79 | 43.2 |
| EES12098 | Sorghum | nucleus | 46.79 | 43.2 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 46.15 | 42.6 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 46.15 | 42.6 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 46.15 | 42.6 |
| Zm00001d025338_P001 | Maize | nucleus | 46.15 | 42.35 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.15 | 42.11 |
| Zm00001d016683_P001 | Maize | nucleus | 44.87 | 41.92 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 45.51 | 40.8 |
| Os02t0528100-01 | Rice | cytosol | 44.87 | 40.23 |
| EES06901 | Sorghum | nucleus | 44.23 | 38.33 |
| CDY13335 | Canola | cytosol | 40.38 | 38.18 |
| CDX67543 | Canola | cytosol, plastid | 40.38 | 38.18 |
| CDY71050 | Canola | cytosol | 55.13 | 29.55 |
| CDY69705 | Canola | cytosol | 2.56 | 16.67 |
Protein Annotations
| EnsemblPlants:CDY32440 | EnsemblPlantsGene:GSBRNA2T00052406001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDY25859.1 | ProteinID:CDY32440 | ProteinID:CDY32440.1 | SEG:seg | UniParc:UPI0004EE2F7B |
| UniProt:A0A078GKS3 | MapMan:35.2 | : | : | : | : |
Description
BnaA09g51560DBnaA05g14500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKS3]
Coordinates
chrLK032295:-:12204..13797
Molecular Weight (calculated)
18236.0 Da
IEP (calculated)
7.686
GRAVY (calculated)
-0.809
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSRQMSNE DEEMSRTALS AIRAKEEEIE KNKMEIRERV QAQLGRVEEE TKRLALIREE LEGLAEPMRK EVALARKKID SVNKELKPLG HTVQKKEREY
101: KEALEAFNEK NREKVQLITK LTEVSQLILK SFSFFYLLNI VIGDSEEKAH ARQKAE
101: KEALEAFNEK NREKVQLITK LTEVSQLILK SFSFFYLLNI VIGDSEEKAH ARQKAE
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.