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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • cytosol 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
 plastid: 20363867
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g088000.2.1
Solyc07g047770.2.1
Solyc09g009210.2.1
Solyc10g083520.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36410.1 Solyc09g009210.2.1 AT3G09980.1 21798944
AT2G36410.1 Solyc10g083520.1.1 AT3G09980.1 21798944
AT3G09980.1 Solyc02g088000.2.1 AT3G01180.1 21798944
AT3G09980.1 Solyc09g009210.2.1 AT3G09980.1 21798944
AT3G09980.1 Solyc10g083520.1.1 AT3G09980.1 21798944
AT3G52920.1 Solyc07g047770.2.1 AT5G35750.1 18642946
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400072397 Potato cytosol, extracellular, nucleus, plastid 97.65 97.65
CDY69705 Canola cytosol 12.94 91.67
Solyc09g009210.2.1 Tomato nucleus 86.47 88.55
Bra028542.1-P Field mustard nucleus 69.41 74.68
Bra017239.1-P Field mustard cytosol 56.47 73.85
CDY13331 Canola nucleus 70.0 73.46
KRH67862 Soybean nucleus 71.76 73.05
KRG96151 Soybean nucleus 71.18 72.46
VIT_08s0007g03770.t01 Wine grape nucleus 70.59 72.29
CDX67549 Canola nucleus 67.06 71.7
CDY27436 Canola cytosol 43.53 71.15
AT3G09980.1 Thale cress nucleus, plastid 71.76 68.54
Bra006959.1-P Field mustard nucleus 66.47 68.48
CDX78133 Canola nucleus 66.47 68.48
CDX73594 Canola nucleus 65.88 67.47
CDY66899 Canola nucleus 68.24 67.44
CDY60156 Canola cytosol, plastid 70.59 67.42
Bra029810.1-P Field mustard cytosol, plastid 70.0 66.85
Bra001292.1-P Field mustard nucleus 70.0 66.11
CDY00898 Canola cytosol, plastid 68.82 65.73
CDX74002 Canola nucleus 69.41 65.56
AT3G52920.1 Thale cress nucleus 67.65 63.89
CDY43720 Canola nucleus 64.12 62.29
AT5G03660.1 Thale cress nucleus 62.94 61.85
CDY17934 Canola cytosol 54.12 61.33
CDY10366 Canola nucleus 62.35 61.27
CDX70295 Canola nucleus 62.35 61.27
Solyc11g066970.1.1 Tomato nucleus 61.18 60.47
CDY32440 Canola cytosol 55.29 60.26
CDY25859 Canola cytosol 55.29 60.26
CDY70153 Canola nucleus, plastid 61.76 60.0
GSMUA_Achr3P18940_001 Banana nucleus 55.88 59.75
Bra017238.1-P Field mustard plastid 65.29 58.42
CDY43719 Canola plastid 65.29 58.12
CDY57618 Canola cytosol, mitochondrion, nucleus 60.0 57.95
CDX79677 Canola cytosol, mitochondrion, nucleus 60.0 57.95
AT2G36410.1 Thale cress nucleus, plastid 66.47 57.95
CDX79678 Canola cytosol 51.76 57.52
GSMUA_Achr2P20290_001 Banana nucleus 57.65 56.65
GSMUA_Achr8P16080_001 Banana nucleus 58.24 56.57
CDX84559 Canola cytosol, nucleus, plastid 58.24 56.25
Bra023067.1-P Field mustard cytosol, nucleus, plastid 58.24 56.25
Os04t0408600-01 Rice cytosol 55.29 55.62
TraesCS2A01G292600.1 Wheat nucleus 54.71 55.03
TraesCS2D01G290400.1 Wheat nucleus 54.71 55.03
HORVU2Hr1G072420.11 Barley nucleus 54.71 55.03
TraesCS2B01G309000.1 Wheat cytosol, mitochondrion, nucleus, plastid 55.29 54.97
Zm00001d025338_P001 Maize nucleus 54.71 54.71
Zm00001d016683_P001 Maize nucleus 53.53 54.49
EES12098 Sorghum nucleus 54.12 54.44
Solyc11g007330.1.1 Tomato nucleus 51.18 53.05
Os02t0528100-01 Rice cytosol 52.35 51.15
EES06901 Sorghum nucleus 52.35 49.44
Bra013746.1-P Field mustard nucleus, plastid 24.71 47.73
Bra009520.1-P Field mustard cytosol, nucleus, peroxisome 55.29 46.53
Bra023068.1-P Field mustard nucleus 67.65 40.07
CDY71050 Canola cytosol 42.35 24.74
Bra027585.1-P Field mustard plastid 45.88 16.92
Protein Annotations
EnsemblPlants:Solyc10g083520.1.1EnsemblPlantsGene:Solyc10g083520.1InterPro:GORABncoils:CoilPANTHER:PTHR21470PANTHER:PTHR21470:SF4
PFAM:PF04949SEG:segUniParc:UPI0002769F21UniProt:K4D3D9MapMan:35.2:
Description
No Description!
Coordinates
chr10:+:63314949..63316366
Molecular Weight (calculated)
19714.8 Da
IEP (calculated)
8.451
GRAVY (calculated)
-0.966
Length
170 amino acids
Sequence
(BLAST)
001: MPNQKQGSEQ LQTLMQSGQI SGSFSFNGTL SKEDEEMSRS ALSTFKAKEE EIEKRKMEVK ERVQAQLGRV EEETRRLAII REELEALADP MKKDVQTVRK
101: RIDAVNKELK PLGQTCQKKE KEYKEALEAF NEKHKEKVQL ISRLMELVGE SEKMRLKKLE ELSKSIETIQ
Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)
001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
Arabidopsis Description
Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.