Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69705 | Canola | cytosol | 15.03 | 95.83 |
| CDY13331 | Canola | nucleus | 65.36 | 61.73 |
| CDX67549 | Canola | nucleus | 62.75 | 60.38 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 75.82 | 59.49 |
| CDY43719 | Canola | plastid | 73.2 | 58.64 |
| CDX78133 | Canola | nucleus | 61.44 | 56.97 |
| CDX73594 | Canola | nucleus | 60.78 | 56.02 |
| CDY60156 | Canola | cytosol, plastid | 63.4 | 54.49 |
| CDY66899 | Canola | nucleus | 60.78 | 54.07 |
| KRH67862 | Soybean | nucleus | 58.82 | 53.89 |
| KRG96151 | Soybean | nucleus | 57.52 | 52.69 |
| PGSC0003DMT400007017 | Potato | nucleus | 56.86 | 52.41 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 58.17 | 52.35 |
| CDY00898 | Canola | cytosol, plastid | 60.78 | 52.25 |
| Solyc09g009210.2.1 | Tomato | nucleus | 56.21 | 51.81 |
| Solyc10g083520.1.1 | Tomato | plastid | 57.52 | 51.76 |
| CDX74002 | Canola | nucleus | 60.78 | 51.67 |
| CDY43720 | Canola | nucleus | 58.82 | 51.43 |
| CDY27436 | Canola | cytosol | 34.64 | 50.96 |
| CDY10366 | Canola | nucleus | 55.56 | 49.13 |
| CDX70295 | Canola | nucleus | 55.56 | 49.13 |
| Bra023068.1-P | Field mustard | nucleus | 90.85 | 48.43 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 54.9 | 47.73 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 51.63 | 47.59 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 53.59 | 46.59 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 53.59 | 46.59 |
| CDY70153 | Canola | nucleus, plastid | 52.94 | 46.29 |
| CDY25859 | Canola | cytosol | 47.06 | 46.15 |
| CDY32440 | Canola | cytosol | 47.06 | 46.15 |
| CDY17934 | Canola | cytosol | 44.44 | 45.33 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 44.44 | 42.77 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 45.1 | 40.83 |
| CDX71428 | Canola | cytosol | 45.1 | 40.83 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 45.75 | 40.0 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 45.1 | 39.88 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 45.1 | 39.66 |
| Os04t0408600-01 | Rice | cytosol | 43.14 | 39.05 |
| EES12098 | Sorghum | nucleus | 43.14 | 39.05 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 42.48 | 38.46 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 42.48 | 38.46 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 42.48 | 38.46 |
| Zm00001d025338_P001 | Maize | nucleus | 42.48 | 38.24 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.83 | 37.43 |
| Zm00001d016683_P001 | Maize | nucleus | 39.87 | 36.53 |
| Os02t0528100-01 | Rice | cytosol | 41.18 | 36.21 |
| EES06901 | Sorghum | nucleus | 41.18 | 35.0 |
| CDX67543 | Canola | cytosol, plastid | 36.6 | 33.94 |
| CDY13335 | Canola | cytosol | 36.6 | 33.94 |
| CDY71050 | Canola | cytosol | 29.41 | 15.46 |
Protein Annotations
| EnsemblPlants:CDX79678 | EnsemblPlantsGene:GSBRNA2T00132477001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDX79678 | ProteinID:CDX79678.1 | SEG:seg | UniParc:UPI0004EF04D9 | MapMan:35.2 |
Description
BnaC03g20140D
Coordinates
chrLK031818:+:1532422..1533695
Molecular Weight (calculated)
17145.6 Da
IEP (calculated)
6.562
GRAVY (calculated)
-0.600
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQTNAGAGT GAAATTEPPQ SNEMVLHTGS LSFSSHMSKE DEEMTRSALS AFKAKEDEID KRRMEVRERI QAQLGRILLS LSLSLSLSLS LELKPLGSTV
101: QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRM KKLEELSKSI ESV
101: QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRM KKLEELSKSI ESV
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.