Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52920.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT3G52920.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028542.1-P | Field mustard | nucleus | 96.91 | 99.37 |
| CDX67549 | Canola | nucleus | 95.68 | 97.48 |
| CDY69705 | Canola | cytosol | 14.2 | 95.83 |
| CDX78133 | Canola | nucleus | 91.98 | 90.3 |
| CDX73594 | Canola | nucleus | 90.74 | 88.55 |
| AT3G52920.1 | Thale cress | nucleus | 88.27 | 79.44 |
| CDY27436 | Canola | cytosol | 50.62 | 78.85 |
| CDY60156 | Canola | cytosol, plastid | 80.25 | 73.03 |
| CDY66899 | Canola | nucleus | 77.16 | 72.67 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 75.31 | 71.76 |
| CDY00898 | Canola | cytosol, plastid | 78.4 | 71.35 |
| KRH67862 | Soybean | nucleus | 73.46 | 71.26 |
| CDY43719 | Canola | plastid | 83.95 | 71.2 |
| CDX74002 | Canola | nucleus | 78.4 | 70.56 |
| KRG96151 | Soybean | nucleus | 72.22 | 70.06 |
| Solyc10g083520.1.1 | Tomato | plastid | 73.46 | 70.0 |
| CDY10366 | Canola | nucleus | 74.69 | 69.94 |
| CDX70295 | Canola | nucleus | 74.69 | 69.94 |
| PGSC0003DMT400007017 | Potato | nucleus | 71.6 | 69.88 |
| Solyc09g009210.2.1 | Tomato | nucleus | 71.6 | 69.88 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 69.14 | 67.47 |
| CDY25859 | Canola | cytosol | 64.81 | 67.31 |
| CDY32440 | Canola | cytosol | 64.81 | 67.31 |
| CDY70153 | Canola | nucleus, plastid | 72.22 | 66.86 |
| CDY17934 | Canola | cytosol | 61.73 | 66.67 |
| CDY43720 | Canola | nucleus | 71.6 | 66.29 |
| CDX79678 | Canola | cytosol | 61.73 | 65.36 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 67.28 | 61.93 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 67.28 | 61.93 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 67.28 | 61.93 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 57.41 | 58.49 |
| CDX71428 | Canola | cytosol | 58.02 | 55.62 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 59.88 | 55.43 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 57.41 | 55.03 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 58.02 | 54.34 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.79 | 52.87 |
| Os04t0408600-01 | Rice | cytosol | 54.94 | 52.66 |
| Zm00001d016683_P001 | Maize | nucleus | 53.7 | 52.1 |
| EES12098 | Sorghum | nucleus | 54.32 | 52.07 |
| Zm00001d025338_P001 | Maize | nucleus | 54.32 | 51.76 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 53.7 | 51.48 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 53.7 | 51.48 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 53.7 | 51.48 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.7 | 50.88 |
| CDX67543 | Canola | cytosol, plastid | 49.38 | 48.48 |
| CDY13335 | Canola | cytosol | 49.38 | 48.48 |
| Os02t0528100-01 | Rice | cytosol | 51.85 | 48.28 |
| EES06901 | Sorghum | nucleus | 51.85 | 46.67 |
| CDY71050 | Canola | cytosol | 48.15 | 26.8 |
Protein Annotations
| EnsemblPlants:CDY13331 | EnsemblPlantsGene:GSBRNA2T00071330001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | ProteinID:CDY13331 | ProteinID:CDY13331.1 | SEG:seg | UniParc:UPI0004EEEAA7 | UniProt:A0A078FJG0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g14260DBnaC06g14260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJG0]
Coordinates
chrLK032034:-:380489..382390
Molecular Weight (calculated)
18984.9 Da
IEP (calculated)
8.918
GRAVY (calculated)
-1.069
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTEPAQPQ SQQMKSLSFS SQMSREDEEM ARSALSAFRA KEDEIEKRKM EVRERVKAQL GRVEEETRRL ANIREELETM ADPMRKEVSL VRKKIDSVNK
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRLK KLEELSKSIE TE
101: ELKPLGATVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRLK KLEELSKSIE TE
001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN
Arabidopsis Description
Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.