Factsheet for Bra028542.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52920.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13331	Canola	nucleus	99.37	96.91
CDX67549	Canola	nucleus	96.2	95.6
Bra006959.1-P	Field mustard	nucleus	91.14	87.27
Bra017239.1-P	Field mustard	cytosol	67.72	82.31
AT3G52920.1	Thale cress	nucleus	89.87	78.89
Bra029810.1-P	Field mustard	cytosol, plastid	80.38	71.35
KRH67862	Soybean	nucleus	75.32	71.26
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	75.95	70.59
Bra017238.1-P	Field mustard	plastid	84.81	70.53
KRG96151	Soybean	nucleus	74.05	70.06
Bra001292.1-P	Field mustard	nucleus	79.75	70.0
Solyc10g083520.1.1	Tomato	plastid	74.68	69.41
PGSC0003DMT400007017	Potato	nucleus	72.78	69.28
Solyc09g009210.2.1	Tomato	nucleus	72.78	69.28
VIT_08s0007g03770.t01	Wine grape	nucleus	69.62	66.27
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	68.99	61.93
GSMUA_Achr3P18940_001	Banana	nucleus	58.23	57.86
Bra012002.1-P	Field mustard	nucleus	58.23	56.44
GSMUA_Achr8P16080_001	Banana	nucleus	60.76	54.86
GSMUA_Achr2P20290_001	Banana	nucleus	58.86	53.76
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	67.72	52.97
Os04t0408600-01	Rice	cytosol	56.33	52.66
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	57.59	52.3
EES12098	Sorghum	nucleus	55.7	52.07
Zm00001d025338_P001	Maize	nucleus	55.7	51.76
Zm00001d016683_P001	Maize	nucleus	53.8	50.9
HORVU2Hr1G072420.11	Barley	nucleus	54.43	50.89
TraesCS2A01G292600.1	Wheat	nucleus	54.43	50.89
TraesCS2D01G290400.1	Wheat	nucleus	54.43	50.89
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.43	50.29
Bra013746.1-P	Field mustard	nucleus, plastid	27.85	50.0
Bra028539.1-P	Field mustard	cytosol, plastid	50.0	47.88
Os02t0528100-01	Rice	cytosol	52.53	47.7
EES06901	Sorghum	nucleus	53.16	46.67
Bra023068.1-P	Field mustard	nucleus	84.18	46.34
Bra027585.1-P	Field mustard	plastid	51.27	17.57

Protein Annotations

EnsemblPlants:Bra028542.1	EnsemblPlants:Bra028542.1-P	EnsemblPlantsGene:Bra028542	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF4	PFAM:PF04949	SEG:seg	UniParc:UPI0002543461	UniProt:M4EIC7	MapMan:35.2

Description

AT3G52920 (E=6e-065) | unknown protein

Coordinates

chrA02:+:981447..982611

Molecular Weight (calculated)

18557.4 Da

IEP (calculated)

8.918

GRAVY (calculated)

-1.054

Length

158 amino acids

Sequence
(BLAST)

001: MQPTEPAQQM KSLSFSSQMS REDEEMARSA LSAFRAKEDE IEKRKMEVRE RVKAQLGRVE EETRRLANIR EELENMADPM RKEVSLVRKK IDSVNKELKP
101: LGATVQKKER EYKEALDTFN EKNREKVQLI TKLMELVGES EKLRLKKLEE LSKSIETE

Best Arabidopsis Sequence Match ( AT3G52920.2 )
(BLAST)

001: MTTTNEATTQ PPQQMMSLSF SSQMSKEDEE MARSALSAFR AKEDEIEKRK MEVRERVKAQ LGRVEEETRR LASIREELET MADPMRKEVN WVRKKIDSVN
101: KELKPLGSTV QKKEREYKEA LDTFNEKNRE KVQLITKLME LVGESEKLRL KKLDELSRSI DTESESISQD KTIPIKN

Arabidopsis Description

Transcriptional activator (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8L9S7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.