Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013746.1-P | |
| Bra027585.1-P | |
| Bra029810.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36410.1 | Bra013746.1-P | AT3G09980.1 | 21798944 |
| AT2G36410.1 | Bra027585.1-P | AT3G09980.1 | 21798944 |
| AT2G36410.1 | Bra029810.1-P | AT3G09980.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69705 | Canola | cytosol | 8.36 | 100.0 |
| CDX79678 | Canola | cytosol | 48.43 | 90.85 |
| Bra028542.1-P | Field mustard | nucleus | 46.34 | 84.18 |
| Bra017239.1-P | Field mustard | cytosol | 36.59 | 80.77 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 53.31 | 78.46 |
| Bra006959.1-P | Field mustard | nucleus | 44.95 | 78.18 |
| Bra017238.1-P | Field mustard | plastid | 51.57 | 77.89 |
| KRH67862 | Soybean | nucleus | 41.12 | 70.66 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 43.21 | 69.66 |
| KRG96151 | Soybean | nucleus | 40.42 | 69.46 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 40.77 | 68.82 |
| Solyc09g009210.2.1 | Tomato | nucleus | 39.37 | 68.07 |
| PGSC0003DMT400007017 | Potato | nucleus | 39.37 | 68.07 |
| Bra001292.1-P | Field mustard | nucleus | 42.51 | 67.78 |
| Solyc10g083520.1.1 | Tomato | plastid | 40.07 | 67.65 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 40.07 | 65.34 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 37.63 | 65.06 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 30.66 | 55.35 |
| Bra012002.1-P | Field mustard | nucleus | 31.01 | 54.6 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 31.71 | 52.6 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 32.06 | 52.57 |
| EES12098 | Sorghum | nucleus | 30.66 | 52.07 |
| Os04t0408600-01 | Rice | cytosol | 30.66 | 52.07 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 31.36 | 51.72 |
| Zm00001d025338_P001 | Maize | nucleus | 30.31 | 51.18 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 29.62 | 50.3 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 29.62 | 50.3 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 29.62 | 50.3 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.27 | 49.12 |
| Zm00001d016683_P001 | Maize | nucleus | 28.57 | 49.1 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 34.15 | 48.51 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 27.87 | 48.48 |
| Os02t0528100-01 | Rice | cytosol | 29.27 | 48.28 |
| EES06901 | Sorghum | nucleus | 29.62 | 47.22 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 14.29 | 46.59 |
| Bra027585.1-P | Field mustard | plastid | 28.92 | 18.0 |
Protein Annotations
Description
AT2G36410 (E=1e-079) | unknown protein
Coordinates
chrA03:+:8495585..8498995
Molecular Weight (calculated)
32968.8 Da
IEP (calculated)
4.740
GRAVY (calculated)
-0.925
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQTNAGAGT GAAATTEPPQ SNEMVLHTGS LSFSSHMSKE DEEMTRSALS AFKAKEDEID KRRMEVRERI QAQLGRVEEE TRRLSTIREE LESMADPMRK
101: EVSMVRKKID SVNKELKPLG STVQKKEREY KEALDTFNEK NREKVQLITK LMEMEQLVGE SEKLRMKKLE ELSKSIETVL TDSSLLIRFN DSNSLDELTE
201: LMDSSSSYDQ NDKMCDDEIQ GEETSEPCLA RKRRKETERS SYALSPKPRK LVAHRVNVWE FFIQKEDDPT QNNCCLCEFL EADESST
101: EVSMVRKKID SVNKELKPLG STVQKKEREY KEALDTFNEK NREKVQLITK LMEMEQLVGE SEKLRMKKLE ELSKSIETVL TDSSLLIRFN DSNSLDELTE
201: LMDSSSSYDQ NDKMCDDEIQ GEETSEPCLA RKRRKETERS SYALSPKPRK LVAHRVNVWE FFIQKEDDPT QNNCCLCEFL EADESST
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.