Factsheet for Bra013746.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013746.1-P
Bra021487.1-P
Bra027585.1-P
Bra029810.1-P
Bra039138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	Bra021487.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra039138.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra013746.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra027585.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra029810.1-P	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029810.1-P	Field mustard	cytosol, plastid	79.55	39.33
AT3G09980.1	Thale cress	nucleus, plastid	77.27	38.2
Bra001292.1-P	Field mustard	nucleus	65.91	32.22
CDY32440	Canola	cytosol	54.55	30.77
CDY25859	Canola	cytosol	54.55	30.77
Bra028542.1-P	Field mustard	nucleus	50.0	27.85
CDY17934	Canola	cytosol	46.59	27.33
Bra006959.1-P	Field mustard	nucleus	48.86	26.06
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	48.86	25.29
KRH67862	Soybean	nucleus	47.73	25.15
Solyc10g083520.1.1	Tomato	plastid	47.73	24.71
KRG96151	Soybean	nucleus	46.59	24.55
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	53.41	23.27
VIT_08s0007g03770.t01	Wine grape	nucleus	43.18	22.89
Solyc09g009210.2.1	Tomato	nucleus	43.18	22.89
PGSC0003DMT400007017	Potato	nucleus	43.18	22.89
Bra017238.1-P	Field mustard	plastid	48.86	22.63
Bra017239.1-P	Field mustard	cytosol	32.95	22.31
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	40.91	20.45
GSMUA_Achr8P16080_001	Banana	nucleus	39.77	20.0
GSMUA_Achr2P20290_001	Banana	nucleus	37.5	19.08
HORVU2Hr1G072420.11	Barley	nucleus	32.95	17.16
TraesCS2A01G292600.1	Wheat	nucleus	32.95	17.16
TraesCS2D01G290400.1	Wheat	nucleus	32.95	17.16
Zm00001d025338_P001	Maize	nucleus	32.95	17.06
GSMUA_Achr3P18940_001	Banana	nucleus	30.68	16.98
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	32.95	16.96
Zm00001d016683_P001	Maize	nucleus	30.68	16.17
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	31.82	16.09
EES12098	Sorghum	nucleus	30.68	15.98
Bra012002.1-P	Field mustard	nucleus	29.55	15.95
Os04t0408600-01	Rice	cytosol	29.55	15.38
Bra028539.1-P	Field mustard	cytosol, plastid	27.27	14.55
Bra027585.1-P	Field mustard	plastid	76.14	14.53
Os02t0528100-01	Rice	cytosol	28.41	14.37
Bra023068.1-P	Field mustard	nucleus	46.59	14.29
EES06901	Sorghum	nucleus	27.27	13.33

Protein Annotations

EnsemblPlants:Bra013746.1	EnsemblPlants:Bra013746.1-P	EnsemblPlantsGene:Bra013746	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF4	PFAM:PF04949	SEG:seg	UniParc:UPI0002545EE1	UniProt:M4DB86	MapMan:35.2

Description

AT3G09980 (E=7e-017) | unknown protein

Coordinates

chrA01:-:7543578..7543963

Molecular Weight (calculated)

9978.0 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.673

Length

88 amino acids

Sequence
(BLAST)

1: MKEMQAIETS QPTVAPPAKH SRQLGAQLSG SMSFSSQMSN EDEEMSRTTL SAIRAKEEEI EKNKMEIRER VQAQLGRVEC VLIQHIFK

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.