Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12098 | Sorghum | nucleus | 86.98 | 86.98 |
| Zm00001d025338_P001 | Maize | nucleus | 86.39 | 85.88 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 85.21 | 85.21 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 85.21 | 85.21 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 84.02 | 84.02 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 84.62 | 83.63 |
| Os02t0528100-01 | Rice | cytosol | 69.23 | 67.24 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 68.64 | 66.29 |
| CDY27436 | Canola | cytosol | 38.46 | 62.5 |
| CDY69705 | Canola | cytosol | 8.88 | 62.5 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 58.58 | 62.26 |
| KRG96151 | Soybean | nucleus | 60.35 | 61.08 |
| KRH67862 | Soybean | nucleus | 59.76 | 60.48 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 61.54 | 60.47 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 58.58 | 59.64 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 60.35 | 58.96 |
| Solyc09g009210.2.1 | Tomato | nucleus | 57.4 | 58.43 |
| PGSC0003DMT400007017 | Potato | nucleus | 56.8 | 57.83 |
| Bra017239.1-P | Field mustard | cytosol | 44.38 | 57.69 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 56.8 | 56.47 |
| Bra028542.1-P | Field mustard | nucleus | 52.66 | 56.33 |
| KRH25180 | Soybean | plastid | 57.99 | 55.68 |
| KRH30497 | Soybean | plastid | 57.4 | 55.43 |
| CDX67549 | Canola | nucleus | 52.07 | 55.35 |
| Solyc10g083520.1.1 | Tomato | plastid | 55.62 | 55.29 |
| KRG92044 | Soybean | nucleus | 55.03 | 55.03 |
| CDY13331 | Canola | nucleus | 52.66 | 54.94 |
| CDY66899 | Canola | nucleus | 55.62 | 54.65 |
| KRH34738 | Soybean | cytosol | 55.03 | 54.07 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 56.8 | 53.93 |
| PGSC0003DMT400068276 | Potato | nucleus | 55.03 | 53.76 |
| Solyc11g066970.1.1 | Tomato | nucleus | 53.85 | 52.91 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 55.62 | 52.81 |
| CDY60156 | Canola | cytosol, plastid | 55.62 | 52.81 |
| AT5G03660.1 | Thale cress | nucleus | 53.85 | 52.6 |
| Bra001292.1-P | Field mustard | nucleus | 55.62 | 52.22 |
| Bra012002.1-P | Field mustard | nucleus | 50.3 | 52.15 |
| CDX70295 | Canola | nucleus | 53.25 | 52.02 |
| CDY10366 | Canola | nucleus | 53.25 | 52.02 |
| CDX73594 | Canola | nucleus | 50.89 | 51.81 |
| CDX74002 | Canola | nucleus | 55.03 | 51.67 |
| CDX78133 | Canola | nucleus | 50.3 | 51.52 |
| Bra006959.1-P | Field mustard | nucleus | 50.3 | 51.52 |
| CDY17934 | Canola | cytosol | 45.56 | 51.33 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 52.66 | 51.15 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 52.66 | 51.15 |
| CDY00898 | Canola | cytosol, plastid | 53.85 | 51.12 |
| CDX67543 | Canola | cytosol, plastid | 49.7 | 50.91 |
| CDY13335 | Canola | cytosol | 49.7 | 50.91 |
| Bra028539.1-P | Field mustard | cytosol, plastid | 49.7 | 50.91 |
| CDX71428 | Canola | cytosol | 50.3 | 50.3 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 50.3 | 50.3 |
| AT2G27740.1 | Thale cress | nucleus | 50.89 | 49.43 |
| AT3G52900.1 | Thale cress | cytosol | 47.34 | 48.78 |
| CDY32440 | Canola | cytosol | 44.97 | 48.72 |
| CDY25859 | Canola | cytosol | 44.97 | 48.72 |
| PGSC0003DMT400050208 | Potato | cytosol | 46.15 | 47.85 |
| AT3G52920.1 | Thale cress | nucleus | 50.89 | 47.78 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 43.79 | 47.74 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 53.85 | 47.15 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 48.52 | 46.59 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 48.52 | 46.59 |
| Solyc11g007330.1.1 | Tomato | nucleus | 44.97 | 46.34 |
| Bra017238.1-P | Field mustard | plastid | 52.07 | 46.32 |
| CDY43719 | Canola | plastid | 52.07 | 46.07 |
| CDY70153 | Canola | nucleus, plastid | 47.34 | 45.71 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 52.66 | 45.64 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 47.34 | 45.45 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 47.34 | 45.45 |
| CDY43720 | Canola | nucleus | 46.15 | 44.57 |
| CDX79678 | Canola | cytosol | 39.05 | 43.14 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 47.93 | 40.1 |
| Bra023068.1-P | Field mustard | nucleus | 52.07 | 30.66 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 15.38 | 29.55 |
| CDY71050 | Canola | cytosol | 36.69 | 21.31 |
| Bra027585.1-P | Field mustard | plastid | 37.87 | 13.88 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4335760 | EMBL:AK121434 | EMBL:AY224583 | ProteinID:BAF14634.1 | ProteinID:BAS89095.1 |
| ncoils:Coil | ProteinID:EEE60948.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:GORAB | EnsemblPlantsGene:Os04g0408600 | EnsemblPlants:Os04t0408600-01 | PFAM:PF04949 | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF6 |
| UniProt:Q84VA6 | UniParc:UPI000005F92D | RefSeq:XP_015634117.1 | SEG:seg | : | : |
Description
Protein of unknown function DUF662 family protein. (Os04t0408600-01)
Coordinates
chr4:-:20221253..20223066
Molecular Weight (calculated)
19393.6 Da
IEP (calculated)
9.380
GRAVY (calculated)
-0.805
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGEVDQPMQ MVLRVKHPSS LGGGGGGGEE EAGEASSRSA LSVFKAKEEQ IERKKMEVRE KVFAQLGRVE EESKRLAFIR QELEGMADPT RKEVEVIRKR
101: IDVVNRQLKP LGKTCVKKEK EYKEILEAYN EKNKEKALLV NRLIELVSES ERMRMKKLEE LNKTVDSLY
101: IDVVNRQLKP LGKTCVKKEK EYKEILEAYN EKNKEKALLV NRLIELVSES ERMRMKKLEE LNKTVDSLY
001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH
Arabidopsis Description
Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.