Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068276 | Potato | nucleus | 87.21 | 86.71 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 73.26 | 73.26 |
| KRH25180 | Soybean | plastid | 71.51 | 69.89 |
| KRH30497 | Soybean | plastid | 70.35 | 69.14 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 58.72 | 63.52 |
| Solyc09g009210.2.1 | Tomato | nucleus | 60.47 | 62.65 |
| Solyc10g083520.1.1 | Tomato | plastid | 60.47 | 61.18 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 59.3 | 58.96 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 59.3 | 58.29 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 56.4 | 57.4 |
| Bra012002.1-P | Field mustard | nucleus | 53.49 | 56.44 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.98 | 56.32 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 56.98 | 56.32 |
| CDX71428 | Canola | cytosol | 55.23 | 56.21 |
| Zm00001d016683_P001 | Maize | nucleus | 54.07 | 55.69 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 55.23 | 55.56 |
| AT2G27740.1 | Thale cress | nucleus | 55.81 | 55.17 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 54.07 | 55.03 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 54.07 | 55.03 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 53.49 | 54.44 |
| Os04t0408600-01 | Rice | cytosol | 52.91 | 53.85 |
| Zm00001d025338_P001 | Maize | nucleus | 52.33 | 52.94 |
| Solyc11g007330.1.1 | Tomato | nucleus | 50.0 | 52.44 |
| Os02t0528100-01 | Rice | cytosol | 52.91 | 52.3 |
| EES12098 | Sorghum | nucleus | 51.16 | 52.07 |
| EES06901 | Sorghum | nucleus | 51.74 | 49.44 |
Protein Annotations
| EnsemblPlants:Solyc11g066970.1.1 | EnsemblPlantsGene:Solyc11g066970.1 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF4 |
| PFAM:PF04949 | SEG:seg | UniParc:UPI000276A15B | UniProt:K4D9V4 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr11:-:52750389..52752765
Molecular Weight (calculated)
20095.3 Da
IEP (calculated)
9.397
GRAVY (calculated)
-1.009
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTPKQMEQQ QQQQIIKMKN SGMISYNGSP MIDDRDEEMT RSALSAFRAK EEEIERKRKE VSDKVQAQLG RVEEETKRLA EIREKLETFV DPAGKEVTIV
101: RKKIDLVNRE LKPMGQNCQR KEKEYKEALD AFNAKSKEKA QLVTKLMELV SESEKLRMKK LEELSKHIEA LH
101: RKKIDLVNRE LKPMGQNCQR KEKEYKEALD AFNAKSKEKA QLVTKLMELV SESEKLRMKK LEELSKHIEA LH
001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
Arabidopsis Description
At2g27740 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.