Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g066970.1.1 | Tomato | nucleus | 86.71 | 87.21 |
| VIT_06s0061g01440.t01 | Wine grape | nucleus | 70.52 | 70.93 |
| KRH25180 | Soybean | plastid | 71.1 | 69.89 |
| KRH30497 | Soybean | plastid | 69.36 | 68.57 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 55.49 | 60.38 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 60.12 | 59.43 |
| PGSC0003DMT400007017 | Potato | nucleus | 56.65 | 59.04 |
| Bra012002.1-P | Field mustard | nucleus | 54.34 | 57.67 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 57.23 | 57.23 |
| PGSC0003DMT400072397 | Potato | cytosol, extracellular, nucleus, plastid | 56.07 | 57.06 |
| Zm00001d016683_P001 | Maize | nucleus | 54.34 | 56.29 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 54.91 | 56.21 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 56.07 | 55.75 |
| Bra034365.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 56.07 | 55.75 |
| CDX71428 | Canola | cytosol | 54.34 | 55.62 |
| AT2G27740.1 | Thale cress | nucleus | 55.49 | 55.17 |
| Os04t0408600-01 | Rice | cytosol | 53.76 | 55.03 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 53.18 | 54.44 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 53.18 | 54.44 |
| EES12098 | Sorghum | nucleus | 52.6 | 53.85 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 52.6 | 53.85 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.18 | 53.8 |
| Os02t0528100-01 | Rice | cytosol | 53.76 | 53.45 |
| Zm00001d025338_P001 | Maize | nucleus | 51.45 | 52.35 |
| EES06901 | Sorghum | nucleus | 53.76 | 51.67 |
| PGSC0003DMT400050208 | Potato | cytosol | 48.55 | 51.53 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068276 | EnsemblPlantsGene:PGSC0003DMG400026542 | EntrezGene:102594562 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 |
| PANTHER:PTHR21470:SF4 | PFAM:PF04949 | PGSC:PGSC0003DMG400026542 | RefSeq:XP_006349090.1 | SEG:seg | UniParc:UPI0002949BCD |
| UniProt:M1CIR4 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026542]
Coordinates
chr11:-:39846186..39848590
Molecular Weight (calculated)
20208.4 Da
IEP (calculated)
9.397
GRAVY (calculated)
-1.031
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTPKQMEQQ QQQQQIVKMK NSGMISYNGS PMIDDRDEEM TRSALSAFRA KEEEIERKRK EVSDKVHAQL GRVEEETKRL AEIREKLETF VDPAGKEVTI
101: VRKKIDLVNR ELKGMGQNCQ RKEKEYKETL DAFNAKSKEK AQLVTKLMEL VSESEKLRMK KLEELSKHIE ALH
101: VRKKIDLVNR ELKGMGQNCQ RKEKEYKETL DAFNAKSKEK AQLVTKLMEL VSESEKLRMK KLEELSKHIE ALH
001: MATTRQILEQ PQSPFIQRIK SSGNISMNGS PMIDEKEEEL SQSAFALFKA KEDEIERRKM EVKDRVQKKL GLAEEATRRL AEIREELEAL TDPMRKEISA
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
101: IRKRVDAINR ELKPLGQSCQ RKEREFKEAL EAYNEKNKEK AIFVSKLVEL VTESEKLRMT KLEELSKSIE ISLR
Arabidopsis Description
At2g27740 [Source:UniProtKB/TrEMBL;Acc:Q9ZUX5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.