Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
- plastid 1
- extracellular 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36410.1 | PGSC0003DMT400007017 | AT3G09980.1 | 21798944 |
| AT2G36410.1 | PGSC0003DMT400072397 | AT3G09980.1 | 21798944 |
| AT3G09980.1 | PGSC0003DMT400003356 | AT3G01180.1 | 21798944 |
| AT3G09980.1 | PGSC0003DMT400007017 | AT3G09980.1 | 21798944 |
| AT3G09980.1 | PGSC0003DMT400072397 | AT3G09980.1 | 21798944 |
| AT3G52920.1 | PGSC0003DMT400015729 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g083520.1.1 | Tomato | plastid | 97.65 | 97.65 |
| CDY69705 | Canola | cytosol | 12.94 | 91.67 |
| PGSC0003DMT400007017 | Potato | nucleus | 84.71 | 86.75 |
| Bra028542.1-P | Field mustard | nucleus | 70.59 | 75.95 |
| CDY13331 | Canola | nucleus | 71.76 | 75.31 |
| Bra017239.1-P | Field mustard | cytosol | 57.06 | 74.62 |
| KRH67862 | Soybean | nucleus | 71.76 | 73.05 |
| CDX67549 | Canola | nucleus | 68.24 | 72.96 |
| KRG96151 | Soybean | nucleus | 71.18 | 72.46 |
| VIT_08s0007g03770.t01 | Wine grape | nucleus | 70.59 | 72.29 |
| CDY27436 | Canola | cytosol | 44.12 | 72.12 |
| CDX78133 | Canola | nucleus | 67.65 | 69.7 |
| Bra006959.1-P | Field mustard | nucleus | 67.65 | 69.7 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 72.35 | 69.1 |
| CDX73594 | Canola | nucleus | 67.06 | 68.67 |
| CDY66899 | Canola | nucleus | 68.82 | 68.02 |
| CDY60156 | Canola | cytosol, plastid | 71.18 | 67.98 |
| Bra029810.1-P | Field mustard | cytosol, plastid | 70.59 | 67.42 |
| Bra001292.1-P | Field mustard | nucleus | 70.59 | 66.67 |
| CDY00898 | Canola | cytosol, plastid | 69.41 | 66.29 |
| CDX74002 | Canola | nucleus | 70.0 | 66.11 |
| AT3G52920.1 | Thale cress | nucleus | 68.82 | 65.0 |
| CDY43720 | Canola | nucleus | 64.71 | 62.86 |
| AT5G03660.1 | Thale cress | nucleus | 63.53 | 62.43 |
| CDY17934 | Canola | cytosol | 54.71 | 62.0 |
| CDX70295 | Canola | nucleus | 62.94 | 61.85 |
| CDY10366 | Canola | nucleus | 62.94 | 61.85 |
| CDY32440 | Canola | cytosol | 55.88 | 60.9 |
| CDY25859 | Canola | cytosol | 55.88 | 60.9 |
| CDY70153 | Canola | nucleus, plastid | 62.35 | 60.57 |
| Bra017238.1-P | Field mustard | plastid | 66.47 | 59.47 |
| CDY43719 | Canola | plastid | 66.47 | 59.16 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 67.65 | 58.97 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 60.59 | 58.52 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 60.59 | 58.52 |
| CDX79678 | Canola | cytosol | 52.35 | 58.17 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 54.12 | 57.86 |
| Bra023067.1-P | Field mustard | cytosol, nucleus, plastid | 58.82 | 56.82 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 58.82 | 56.82 |
| Os04t0408600-01 | Rice | cytosol | 56.47 | 56.8 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 57.65 | 56.65 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 58.24 | 56.57 |
| PGSC0003DMT400068276 | Potato | nucleus | 57.06 | 56.07 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 55.29 | 55.62 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 55.29 | 55.62 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 55.29 | 55.62 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 55.88 | 55.56 |
| Zm00001d025338_P001 | Maize | nucleus | 55.29 | 55.29 |
| Zm00001d016683_P001 | Maize | nucleus | 54.12 | 55.09 |
| EES12098 | Sorghum | nucleus | 54.71 | 55.03 |
| PGSC0003DMT400050208 | Potato | cytosol | 51.76 | 53.99 |
| Os02t0528100-01 | Rice | cytosol | 52.94 | 51.72 |
| EES06901 | Sorghum | nucleus | 52.94 | 50.0 |
| Bra013746.1-P | Field mustard | nucleus, plastid | 25.29 | 48.86 |
| Bra009520.1-P | Field mustard | cytosol, nucleus, peroxisome | 55.88 | 47.03 |
| Bra023068.1-P | Field mustard | nucleus | 68.82 | 40.77 |
| CDY71050 | Canola | cytosol | 42.94 | 25.09 |
| Bra027585.1-P | Field mustard | plastid | 46.47 | 17.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072397 | EnsemblPlantsGene:PGSC0003DMG400028170 | EntrezGene:102599315 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 |
| PANTHER:PTHR21470:SF4 | PFAM:PF04949 | PGSC:PGSC0003DMG400028170 | RefSeq:XP_006339121.1 | SEG:seg | UniParc:UPI000296A6A9 |
| UniProt:M1CQ83 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400028170]
Coordinates
chr10:-:55670482..55672446
Molecular Weight (calculated)
19759.8 Da
IEP (calculated)
8.454
GRAVY (calculated)
-0.954
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNQKQGSEQ LQTLMQSGQI SGSFSFNGTL SKEDEEMSRS ALSTFKAKEE EIEKRKMEVR ERVQAQLGRV EEETRRLAII REELETLADP MKKDVSTVRK
101: RIDVVNKELK PLGQTCQKKE KEYKEALEAF NEKHKEKVQL ISRLMELVGE SEKMRLKKLE ELSKSIETIQ
101: RIDVVNKELK PLGQTCQKKE KEYKEALEAF NEKHKEKVQL ISRLMELVGE SEKMRLKKLE ELSKSIETIQ
001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRMI KLEELSKSIE TV
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEL VGESEKLRMI KLEELSKSIE TV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.