CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00898
CDY17934
CDY25859
CDY27436
CDY32440
CDY34693
CDY37538
CDY43274
CDY55806
CDY60156
CDY70153
CDY71050

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	CDY34693	AT3G01180.1	21798944
AT3G09980.1	CDY37538	AT3G01180.1	21798944
AT3G09980.1	CDY43274	AT3G01180.1	21798944
AT3G09980.1	CDY55806	AT3G01180.1	21798944
AT3G09980.1	CDY00898	AT3G09980.1	21798944
AT3G09980.1	CDY17934	AT3G09980.1	21798944
AT3G09980.1	CDY25859	AT3G09980.1	21798944
AT3G09980.1	CDY27436	AT3G09980.1	21798944
AT3G09980.1	CDY32440	AT3G09980.1	21798944
AT3G09980.1	CDY60156	AT3G09980.1	21798944
AT3G09980.1	CDY70153	AT3G09980.1	21798944
AT3G09980.1	CDY71050	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029810.1-P	Field mustard	cytosol, plastid	99.44	99.44
AT3G09980.1	Thale cress	nucleus, plastid	96.63	96.63
CDY00898	Canola	cytosol, plastid	93.82	93.82
CDY27436	Canola	cytosol	52.25	89.42
CDY70153	Canola	nucleus, plastid	87.08	88.57
CDY66899	Canola	nucleus	85.39	88.37
CDX74002	Canola	nucleus	84.83	83.89
CDY69705	Canola	cytosol	11.24	83.33
CDX67549	Canola	nucleus	71.91	80.5
CDY13331	Canola	nucleus	73.03	80.25
KRH67862	Soybean	nucleus	74.16	79.04
KRG96151	Soybean	nucleus	73.6	78.44
CDY32440	Canola	cytosol	66.85	76.28
CDY25859	Canola	cytosol	66.85	76.28
CDY17934	Canola	cytosol	63.48	75.33
CDX78133	Canola	nucleus	69.66	75.15
CDX73594	Canola	nucleus	69.66	74.7
CDY10366	Canola	nucleus	72.47	74.57
CDX70295	Canola	nucleus	72.47	74.57
VIT_08s0007g03770.t01	Wine grape	nucleus	67.42	72.29
Solyc09g009210.2.1	Tomato	nucleus	67.42	72.29
PGSC0003DMT400007017	Potato	nucleus	66.85	71.69
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	67.98	71.18
Solyc10g083520.1.1	Tomato	plastid	67.42	70.59
CDY43720	Canola	nucleus	65.17	66.29
CDY43719	Canola	plastid	69.66	64.92
CDX79678	Canola	cytosol	54.49	63.4
CDY57618	Canola	cytosol, mitochondrion, nucleus	61.8	62.5
CDX79677	Canola	cytosol, mitochondrion, nucleus	61.8	62.5
CDX84559	Canola	cytosol, nucleus, plastid	60.67	61.36
GSMUA_Achr8P16080_001	Banana	nucleus	59.55	60.57
GSMUA_Achr3P18940_001	Banana	nucleus	52.81	59.12
GSMUA_Achr2P20290_001	Banana	nucleus	57.3	58.96
Zm00001d016683_P001	Maize	nucleus	52.81	56.29
Os04t0408600-01	Rice	cytosol	52.81	55.62
CDX71428	Canola	cytosol	52.25	55.03
CDY04510	Canola	cytosol, nucleus, plastid	52.25	55.03
Zm00001d025338_P001	Maize	nucleus	52.25	54.71
HORVU2Hr1G072420.11	Barley	nucleus	51.69	54.44
TraesCS2A01G292600.1	Wheat	nucleus	51.69	54.44
TraesCS2D01G290400.1	Wheat	nucleus	51.69	54.44
CDY30533	Canola	cytosol, mitochondrion, nucleus, plastid	52.81	54.02
EES12098	Sorghum	nucleus	51.12	53.85
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.69	53.8
Os02t0528100-01	Rice	cytosol	51.12	52.3
EES06901	Sorghum	nucleus	51.12	50.56
CDY13335	Canola	cytosol	45.51	49.09
CDX67543	Canola	cytosol, plastid	45.51	49.09
CDY71050	Canola	cytosol	48.31	29.55

Protein Annotations

EnsemblPlants:CDY60156	EnsemblPlantsGene:GSBRNA2T00028249001	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470	PANTHER:PTHR21470:SF4
PFAM:PF04949	ProteinID:CDY60156	ProteinID:CDY60156.1	SEG:seg	UniParc:UPI0004EF1F17	UniProt:A0A078J936
MapMan:35.2	:	:	:	:	:

Description

BnaAnng16520DBnaAnng16520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J936]

Coordinates

chrLK033849:+:8139..9977

Molecular Weight (calculated)

20506.9 Da

IEP (calculated)

8.908

GRAVY (calculated)

-0.842

Length

178 amino acids

Sequence
(BLAST)

001: MKEMQAIETS QPTVAPPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVALVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT KLMELVGESE KVRMKKLEEL SKNIDSIH

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.