Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67543 | Canola | cytosol, plastid | 97.58 | 97.58 |
| AT3G52900.1 | Thale cress | cytosol | 84.24 | 84.76 |
| AT2G36355.1 | Thale cress | cytosol, extracellular, nucleus | 71.52 | 76.13 |
| CDY69705 | Canola | cytosol | 9.7 | 66.67 |
| KRG92044 | Soybean | nucleus | 60.0 | 58.58 |
| PGSC0003DMT400050208 | Potato | cytosol | 55.76 | 56.44 |
| KRH34738 | Soybean | cytosol | 58.79 | 56.4 |
| Solyc11g007330.1.1 | Tomato | nucleus | 55.15 | 55.49 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 52.73 | 54.72 |
| CDY27436 | Canola | cytosol | 33.33 | 52.88 |
| Os04t0408600-01 | Rice | cytosol | 50.91 | 49.7 |
| CDY13331 | Canola | nucleus | 48.48 | 49.38 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 57.58 | 49.22 |
| CDX67549 | Canola | nucleus | 47.27 | 49.06 |
| EES12098 | Sorghum | nucleus | 49.7 | 48.52 |
| Zm00001d025338_P001 | Maize | nucleus | 49.09 | 47.65 |
| Zm00001d016683_P001 | Maize | nucleus | 47.88 | 47.31 |
| CDX78133 | Canola | nucleus | 47.27 | 47.27 |
| CDX73594 | Canola | nucleus | 47.27 | 46.99 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 48.48 | 46.78 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 47.88 | 46.75 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 47.88 | 46.75 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 47.88 | 46.75 |
| CDY66899 | Canola | nucleus | 48.48 | 46.51 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 49.09 | 46.29 |
| CDX74002 | Canola | nucleus | 50.3 | 46.11 |
| Os02t0528100-01 | Rice | cytosol | 48.48 | 45.98 |
| CDY60156 | Canola | cytosol, plastid | 49.09 | 45.51 |
| CDY30533 | Canola | cytosol, mitochondrion, nucleus, plastid | 47.27 | 44.83 |
| CDX71428 | Canola | cytosol | 45.45 | 44.38 |
| CDY04510 | Canola | cytosol, nucleus, plastid | 45.45 | 44.38 |
| CDY43720 | Canola | nucleus | 46.67 | 44.0 |
| EES06901 | Sorghum | nucleus | 47.88 | 43.89 |
| CDY00898 | Canola | cytosol, plastid | 47.27 | 43.82 |
| CDY17934 | Canola | cytosol | 39.39 | 43.33 |
| CDX84559 | Canola | cytosol, nucleus, plastid | 45.45 | 42.61 |
| CDY10366 | Canola | nucleus | 44.24 | 42.2 |
| CDX70295 | Canola | nucleus | 44.24 | 42.2 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 43.64 | 41.62 |
| CDX79677 | Canola | cytosol, mitochondrion, nucleus | 43.64 | 40.91 |
| CDY57618 | Canola | cytosol, mitochondrion, nucleus | 43.64 | 40.91 |
| CDY70153 | Canola | nucleus, plastid | 43.03 | 40.57 |
| CDY32440 | Canola | cytosol | 38.18 | 40.38 |
| CDY25859 | Canola | cytosol | 38.18 | 40.38 |
| CDY43719 | Canola | plastid | 46.67 | 40.31 |
| CDX79678 | Canola | cytosol | 33.94 | 36.6 |
| CDY71050 | Canola | cytosol | 29.7 | 16.84 |
Protein Annotations
| EnsemblPlants:CDY13335 | EnsemblPlantsGene:GSBRNA2T00071335001 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 |
| PFAM:PF04949 | ProteinID:CDY13335 | ProteinID:CDY13335.1 | SEG:seg | UniParc:UPI0004EEE7D8 | UniProt:A0A078FG00 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g14220DBnaC06g14220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG00]
Coordinates
chrLK032034:-:420418..421331
Molecular Weight (calculated)
18983.1 Da
IEP (calculated)
7.273
GRAVY (calculated)
-0.865
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKNLGAAP AAGSGGNING KLPMEENEEE EMWKVTVSRF QAREEEIERK KMTVKEKVQQ RLGFAEEATR CLTQTLEELE IMGDPMRKEV GMVRKKIDMA
101: NRDIKSLAQS CQKKEKEYKE TLEAFNEKNK EKTHLVSMLM ELLAESERLR MKKLEEINKT VGTLQ
101: NRDIKSLAQS CQKKEKEYKE TLEAFNEKNK EKTHLVSMLM ELLAESERLR MKKLEEINKT VGTLQ
001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ
Arabidopsis Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.