Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028539.1-P | Field mustard | cytosol, plastid | 76.13 | 71.52 |
| CDX67543 | Canola | cytosol, plastid | 76.13 | 71.52 |
| CDY13335 | Canola | cytosol | 76.13 | 71.52 |
| AT3G52900.1 | Thale cress | cytosol | 75.48 | 71.34 |
| KRG92044 | Soybean | nucleus | 55.48 | 50.89 |
| GSMUA_Achr3P18940_001 | Banana | nucleus | 50.97 | 49.69 |
| KRH34738 | Soybean | cytosol | 54.84 | 49.42 |
| PGSC0003DMT400050208 | Potato | cytosol | 51.61 | 49.08 |
| Solyc11g007330.1.1 | Tomato | nucleus | 51.61 | 48.78 |
| AT2G27740.1 | Thale cress | nucleus | 52.9 | 47.13 |
| EES12098 | Sorghum | nucleus | 48.39 | 44.38 |
| TraesCS2D01G290400.1 | Wheat | nucleus | 48.39 | 44.38 |
| TraesCS2A01G292600.1 | Wheat | nucleus | 48.39 | 44.38 |
| Zm00001d016683_P001 | Maize | nucleus | 47.74 | 44.31 |
| VIT_13s0074g00640.t01 | Wine grape | cytosol | 54.84 | 44.04 |
| GSMUA_Achr8P16080_001 | Banana | nucleus | 49.68 | 44.0 |
| TraesCS2B01G309000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 48.39 | 43.86 |
| AT3G09980.1 | Thale cress | nucleus, plastid | 50.32 | 43.82 |
| Os04t0408600-01 | Rice | cytosol | 47.74 | 43.79 |
| HORVU2Hr1G072420.11 | Barley | nucleus | 47.1 | 43.2 |
| Zm00001d025338_P001 | Maize | nucleus | 47.1 | 42.94 |
| GSMUA_Achr2P20290_001 | Banana | nucleus | 47.1 | 42.2 |
| EES06901 | Sorghum | nucleus | 46.45 | 40.0 |
| AT5G03660.1 | Thale cress | nucleus | 44.52 | 39.88 |
| Os02t0528100-01 | Rice | cytosol | 44.52 | 39.66 |
| AT3G52920.1 | Thale cress | nucleus | 45.16 | 38.89 |
| AT2G36410.1 | Thale cress | nucleus, plastid | 45.81 | 36.41 |
Protein Annotations
| ArrayExpress:AT2G36355 | EMBL:DQ487515 | EnsemblPlants:AT2G36355.1 | EnsemblPlantsGene:AT2G36355 | EntrezGene:3768555 | GO:GO:0003674 |
| GO:GO:0008150 | InterPro:GORAB | ncoils:Coil | PANTHER:PTHR21470 | PANTHER:PTHR21470:SF3 | PFAM:PF04949 |
| PO:PO:0000293 | ProteinID:AEC09237.1 | RefSeq:AT2G36355 | RefSeq:AT2G36355-TAIR-G | RefSeq:NP_001031492.1 | TAIR:AT2G36355 |
| TAIR:AT2G36355.1 | Unigene:At.70720 | UniParc:UPI00005DC02E | UniProt:Q1G3R9 | MapMan:35.2 | : |
Description
RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q1G3R9]
Coordinates
chr2:+:15242323..15243431
Molecular Weight (calculated)
18100.8 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.980
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSTNSGATT STKSKIPMEE NQEEEIWRNF QAREEEIERK KMAVKDKIQQ RLGFAEEATR SLTQTLEGLE IMGDPMRKEV GMVRKKIEMA NREIKSLSQS
101: CQKKEREYKE IHEAFDEKNK EKAHLVSILM ELLAESERVR VKKLEEINKT IGSLR
101: CQKKEREYKE IHEAFDEKNK EKAHLVSILM ELLAESERVR VKKLEEINKT IGSLR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.