Factsheet for Bra028539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67543	Canola	cytosol, plastid	100.0	100.0
AT3G52900.1	Thale cress	cytosol	83.64	84.15
AT2G36355.1	Thale cress	cytosol, extracellular, nucleus	71.52	76.13
KRG92044	Soybean	nucleus	60.0	58.58
PGSC0003DMT400050208	Potato	cytosol	55.76	56.44
KRH34738	Soybean	cytosol	58.79	56.4
Solyc11g007330.1.1	Tomato	nucleus	55.15	55.49
GSMUA_Achr3P18940_001	Banana	nucleus	52.73	54.72
Bra017239.1-P	Field mustard	cytosol	41.82	53.08
Bra028542.1-P	Field mustard	nucleus	47.88	50.0
Os04t0408600-01	Rice	cytosol	50.91	49.7
VIT_13s0074g00640.t01	Wine grape	cytosol	57.58	49.22
EES12098	Sorghum	nucleus	49.7	48.52
Zm00001d025338_P001	Maize	nucleus	49.09	47.65
Zm00001d016683_P001	Maize	nucleus	47.88	47.31
Bra006959.1-P	Field mustard	nucleus	47.27	47.27
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	48.48	46.78
TraesCS2D01G290400.1	Wheat	nucleus	47.88	46.75
HORVU2Hr1G072420.11	Barley	nucleus	47.88	46.75
TraesCS2A01G292600.1	Wheat	nucleus	47.88	46.75
GSMUA_Achr8P16080_001	Banana	nucleus	49.09	46.29
Bra012002.1-P	Field mustard	nucleus	45.45	46.01
Bra001292.1-P	Field mustard	nucleus	49.7	45.56
Bra029810.1-P	Field mustard	cytosol, plastid	49.09	45.51
Os02t0528100-01	Rice	cytosol	47.88	45.4
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	47.27	44.83
EES06901	Sorghum	nucleus	48.48	44.44
GSMUA_Achr2P20290_001	Banana	nucleus	44.24	42.2
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	44.85	42.05
Bra017238.1-P	Field mustard	plastid	46.67	40.53
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	40.61	33.17
Bra023068.1-P	Field mustard	nucleus	48.48	27.87
Bra013746.1-P	Field mustard	nucleus, plastid	14.55	27.27
Bra027585.1-P	Field mustard	plastid	31.52	11.28

Protein Annotations

EnsemblPlants:Bra028539.1	EnsemblPlants:Bra028539.1-P	EnsemblPlantsGene:Bra028539	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF3	PFAM:PF04949	SEG:seg	UniParc:UPI000254345E	UniProt:M4EIC4	MapMan:35.2

Description

AT3G52900 (E=1e-071) | unknown protein

Coordinates

chrA02:+:966193..966953

Molecular Weight (calculated)

18925.9 Da

IEP (calculated)

7.273

GRAVY (calculated)

-0.853

Length

165 amino acids

Sequence
(BLAST)

001: MSSKSLGAAP AAGSAGNTNG KLPVEENEEE EMWKVTVSRF QAREEEIERK KMTVKEKVQQ RLGFAEEATR CLTQTLEELE IMGDPMRKEV GMVRKKIDMA
101: NRDIKSLAQS CQKKEKEYKE TLEAFNEKNK EKTHLVSMLM ELLAESERLR MKKLEEINKT VGTLQ

Best Arabidopsis Sequence Match ( AT3G52900.1 )
(BLAST)

001: MSSKNNSGAA AVSGVNTNGK LPMEDNEEEE IWKVAVTRFQ AREEEIERKK MTVKEKVQQR LGFAEEATRC LTQTLEELEI MGDPMRKEVG MVRKKIDMAN
101: RDIKSLAQSC QKKEKEYKDT LEAFNEKNKE KAHLVSMLME LLAESERLRI KKLEEINKTV GTLQ

Arabidopsis Description

RAB6-interacting golgin (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q9LFA1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.