Factsheet for Bra009520.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 3
peroxisome 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10366	Canola	nucleus	76.24	89.02
CDX70295	Canola	nucleus	76.24	89.02
AT5G03660.1	Thale cress	nucleus	67.33	78.61
Bra028542.1-P	Field mustard	nucleus	52.97	67.72
Bra029810.1-P	Field mustard	cytosol, plastid	57.43	65.17
Bra017239.1-P	Field mustard	cytosol	40.59	63.08
Bra006959.1-P	Field mustard	nucleus	50.99	62.42
Bra001292.1-P	Field mustard	nucleus	54.95	61.67
KRH67862	Soybean	nucleus	49.51	59.88
KRG96151	Soybean	nucleus	49.51	59.88
VIT_08s0007g03770.t01	Wine grape	nucleus	46.04	56.02
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	47.03	55.88
Solyc09g009210.2.1	Tomato	nucleus	45.54	55.42
PGSC0003DMT400007017	Potato	nucleus	45.54	55.42
Solyc10g083520.1.1	Tomato	plastid	46.53	55.29
Bra013746.1-P	Field mustard	nucleus, plastid	23.27	53.41
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	45.05	51.7
Bra017238.1-P	Field mustard	plastid	48.02	51.05
GSMUA_Achr3P18940_001	Banana	nucleus	38.12	48.43
Os04t0408600-01	Rice	cytosol	40.1	47.93
GSMUA_Achr8P16080_001	Banana	nucleus	41.09	47.43
Bra012002.1-P	Field mustard	nucleus	38.12	47.24
TraesCS2A01G292600.1	Wheat	nucleus	39.11	46.75
HORVU2Hr1G072420.11	Barley	nucleus	39.11	46.75
TraesCS2D01G290400.1	Wheat	nucleus	39.11	46.75
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	39.11	46.2
EES12098	Sorghum	nucleus	38.61	46.15
Zm00001d025338_P001	Maize	nucleus	38.61	45.88
Zm00001d016683_P001	Maize	nucleus	37.62	45.51
GSMUA_Achr2P20290_001	Banana	nucleus	38.61	45.09
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	38.61	44.83
Os02t0528100-01	Rice	cytosol	35.15	40.8
Bra028539.1-P	Field mustard	cytosol, plastid	33.17	40.61
EES06901	Sorghum	nucleus	36.14	40.56
Bra023068.1-P	Field mustard	nucleus	48.51	34.15
Bra027585.1-P	Field mustard	plastid	40.59	17.79

Protein Annotations

EnsemblPlants:Bra009520.1	EnsemblPlants:Bra009520.1-P	EnsemblPlantsGene:Bra009520	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0009506	GO:GO:0016020	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470	PANTHER:PTHR21470:SF4
PFAM:PF04949	SEG:seg	UniParc:UPI0002547B4F	UniProt:M4CZ73	MapMan:35.2	:

Description

AT5G03660 (E=1e-058) | unknown protein

Coordinates

chrA10:-:17060014..17061091

Molecular Weight (calculated)

23488.4 Da

IEP (calculated)

5.560

GRAVY (calculated)

-0.656

Length

202 amino acids

Sequence
(BLAST)

001: MQPTEATRPA TADQSRRLKD ELSESMSFSS QMKKEDEELS VKALSAFKAK EDEIEKKKME IRERVLAQLG RVEDETKRLA LIREELEGFA DPMRKEVTLI
101: RKKIDSLDKE IKPLGNTVQK KEVEYKDALE AFNEKNKEKV ELITKLQEHL NFPLPSFREP YKMWIKDIYT VDLFQDLGTT LIAIGEAVML RVLESNLRVG
201: HF

Best Arabidopsis Sequence Match ( AT5G03660.3 )
(BLAST)

001: MQPTETSQPA PSDQGRRLKD QLSESMSFSS QMKKEDDELS MKALSAFKAK EEEIEKKKME IRERVQAQLG RVEDESKRLA MIREELEGFA DPMRKEVTMV
101: RKKIDSLDKE LKPLGNTVQK KETEYKDALE AFNEKNKEKV ELITKLQEVC SI

Arabidopsis Description

AT5g03660/F17C15_80 [Source:UniProtKB/TrEMBL;Acc:Q940P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.