Factsheet for Bra017238.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013746.1-P
Bra027585.1-P
Bra029810.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36410.1	Bra013746.1-P	AT3G09980.1	21798944
AT2G36410.1	Bra027585.1-P	AT3G09980.1	21798944
AT2G36410.1	Bra029810.1-P	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43719	Canola	plastid	93.68	93.19
Bra028542.1-P	Field mustard	nucleus	70.53	84.81
AT2G36410.1	Thale cress	nucleus, plastid	83.68	81.54
Bra017239.1-P	Field mustard	cytosol	55.26	80.77
Bra006959.1-P	Field mustard	nucleus	70.0	80.61
KRH67862	Soybean	nucleus	61.58	70.06
Bra029810.1-P	Field mustard	cytosol, plastid	64.74	69.1
KRG96151	Soybean	nucleus	60.53	68.86
Bra001292.1-P	Field mustard	nucleus	63.68	67.22
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	59.47	66.47
PGSC0003DMT400007017	Potato	nucleus	57.89	66.27
Solyc09g009210.2.1	Tomato	nucleus	57.89	66.27
Solyc10g083520.1.1	Tomato	plastid	58.42	65.29
VIT_08s0007g03770.t01	Wine grape	nucleus	56.84	65.06
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	57.89	62.5
Bra012002.1-P	Field mustard	nucleus	47.89	55.83
GSMUA_Achr3P18940_001	Banana	nucleus	44.74	53.46
GSMUA_Achr8P16080_001	Banana	nucleus	48.95	53.14
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	47.89	52.3
Os04t0408600-01	Rice	cytosol	46.32	52.07
GSMUA_Achr2P20290_001	Banana	nucleus	47.37	52.02
Bra023068.1-P	Field mustard	nucleus	77.89	51.57
EES12098	Sorghum	nucleus	45.26	50.89
Zm00001d025338_P001	Maize	nucleus	44.21	49.41
HORVU2Hr1G072420.11	Barley	nucleus	43.68	49.11
TraesCS2A01G292600.1	Wheat	nucleus	43.68	49.11
TraesCS2D01G290400.1	Wheat	nucleus	43.68	49.11
Zm00001d016683_P001	Maize	nucleus	43.16	49.1
Bra013746.1-P	Field mustard	nucleus, plastid	22.63	48.86
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	43.68	48.54
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	51.05	48.02
EES06901	Sorghum	nucleus	44.74	47.22
Os02t0528100-01	Rice	cytosol	43.16	47.13
Bra028539.1-P	Field mustard	cytosol, plastid	40.53	46.67
Bra027585.1-P	Field mustard	plastid	40.53	16.7

Protein Annotations

EnsemblPlants:Bra017238.1	EnsemblPlants:Bra017238.1-P	EnsemblPlantsGene:Bra017238	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF4	PFAM:PF04949	SEG:seg	UniParc:UPI000254423C	UniProt:M4DL57	MapMan:35.2

Description

AT2G36410 (E=1e-063) | unknown protein

Coordinates

chrA04:+:15833364..15834330

Molecular Weight (calculated)

21721.9 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.936

Length

190 amino acids

Sequence
(BLAST)

001: MTQTNAGAST GAAAAATTEL PPPQPQPQTQ RSEMVLHTGS LSFSSHMSRE DEEMTRSALS AFRAKEDEIE KRRAEVRERI QAQLGRVEEE TRRLSTLREE
101: IESMADPMRK EVSVVRKKID SVNKELKPLG STVQKKEREY KEALDTFNEK NREKVQLITK LMEMEQLVGE SEKLRMKKLE ELSKSIEETV

Best Arabidopsis Sequence Match ( AT2G36410.1 )
(BLAST)

001: MTQSQTNDGA GAGAVTTVES VPPQPQSQPQ PQPQQQSNEM VLHTGSLSFS SHMSREDEEM TRSALSAFRA KEDEIEKRRM EVRERIQAQL GRVEQETKRL
101: STIREELESM ADPMRKEVSV VRKKIDSVNK ELKPLGSTVQ KKEREYKEAL DTFNEKNREK VQLITKLMEM EQLVGESEKL RMIKLEELSK SIETV

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SJR4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.