Factsheet for Bra029810.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013746.1-P
Bra021487.1-P
Bra027585.1-P
Bra029810.1-P
Bra039138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09980.1	Bra021487.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra039138.1-P	AT3G01180.1	21798944
AT3G09980.1	Bra013746.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra027585.1-P	AT3G09980.1	21798944
AT3G09980.1	Bra029810.1-P	AT3G09980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60156	Canola	cytosol, plastid	99.44	99.44
AT3G09980.1	Thale cress	nucleus, plastid	96.07	96.07
CDY00898	Canola	cytosol, plastid	93.26	93.26
Bra001292.1-P	Field mustard	nucleus	84.27	83.33
Bra028542.1-P	Field mustard	nucleus	71.35	80.38
Bra013746.1-P	Field mustard	nucleus, plastid	39.33	79.55
Bra017239.1-P	Field mustard	cytosol	57.87	79.23
KRH67862	Soybean	nucleus	74.16	79.04
KRG96151	Soybean	nucleus	73.6	78.44
Bra006959.1-P	Field mustard	nucleus	69.1	74.55
VIT_08s0007g03770.t01	Wine grape	nucleus	67.42	72.29
Solyc09g009210.2.1	Tomato	nucleus	67.42	72.29
PGSC0003DMT400007017	Potato	nucleus	66.85	71.69
PGSC0003DMT400072397	Potato	cytosol, extracellular, nucleus, plastid	67.42	70.59
Solyc10g083520.1.1	Tomato	plastid	66.85	70.0
Bra017238.1-P	Field mustard	plastid	69.1	64.74
Bra023067.1-P	Field mustard	cytosol, nucleus, plastid	60.11	60.8
GSMUA_Achr8P16080_001	Banana	nucleus	59.55	60.57
GSMUA_Achr3P18940_001	Banana	nucleus	52.81	59.12
GSMUA_Achr2P20290_001	Banana	nucleus	57.3	58.96
Bra009520.1-P	Field mustard	cytosol, nucleus, peroxisome	65.17	57.43
Zm00001d016683_P001	Maize	nucleus	52.81	56.29
Bra012002.1-P	Field mustard	nucleus	51.12	55.83
Os04t0408600-01	Rice	cytosol	52.81	55.62
Zm00001d025338_P001	Maize	nucleus	52.25	54.71
HORVU2Hr1G072420.11	Barley	nucleus	51.69	54.44
TraesCS2A01G292600.1	Wheat	nucleus	51.69	54.44
TraesCS2D01G290400.1	Wheat	nucleus	51.69	54.44
EES12098	Sorghum	nucleus	51.12	53.85
TraesCS2B01G309000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.69	53.8
Bra034365.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.25	53.45
Os02t0528100-01	Rice	cytosol	51.12	52.3
EES06901	Sorghum	nucleus	51.12	50.56
Bra028539.1-P	Field mustard	cytosol, plastid	45.51	49.09
Bra023068.1-P	Field mustard	nucleus	69.66	43.21
Bra027585.1-P	Field mustard	plastid	63.48	24.51

Protein Annotations

EnsemblPlants:Bra029810.1	EnsemblPlants:Bra029810.1-P	EnsemblPlantsGene:Bra029810	InterPro:GORAB	ncoils:Coil	PANTHER:PTHR21470
PANTHER:PTHR21470:SF4	PFAM:PF04949	SEG:seg	UniParc:UPI0002547A43	UniProt:M4ELZ0	MapMan:35.2

Description

AT3G09980 (E=5e-074) | unknown protein

Coordinates

chrA05:-:22182281..22183694

Molecular Weight (calculated)

20481.9 Da

IEP (calculated)

7.779

GRAVY (calculated)

-0.806

Length

178 amino acids

Sequence
(BLAST)

001: MKEMQAIETS QPTVAPPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIREM VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVALVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT KLMELVGESE KVRMKKLEEL SKNIDSIH

Best Arabidopsis Sequence Match ( AT3G09980.1 )
(BLAST)

001: MKEMQAIETS QPTTVAPAVH SRQLGAQLSG SMSFSSQMSK EDEEMSRTAL SAFRAKEEEI EKKKMEIRER VQAQLGRVEE ETKRLALIRE ELEGLADPMR
101: KEVAMVRKKI DSVNKELKPL GHTVQKKERE YKEALEAFNE KNREKVQLIT RLMELVGESE KMRMKKLEEL SKNIDSIH

Arabidopsis Description

Ankyrin repeat 30A-like protein (DUF662) [Source:UniProtKB/TrEMBL;Acc:Q8RXZ8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.