Factsheet for Bra039138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006216.1-P
Bra008801.1-P
Bra017974.1-P
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	Bra018126.1-P	AT3G47620.1	21798944
AT3G01180.1	Bra017974.1-P	AT3G49580.1	21798944
AT3G01180.1	Bra006216.1-P	AT5G13810.1	21798944
AT3G01180.1	Bra008801.1-P	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37538	Canola	plastid	87.42	99.56
AT3G01180.1	Thale cress	plastid	86.64	84.34
Bra021486.1-P	Field mustard	endoplasmic reticulum	22.7	82.94
Bra021487.1-P	Field mustard	cytosol	31.0	64.42
PGSC0003DMT400003356	Potato	cytosol	61.48	61.8
Solyc02g088000.2.1	Tomato	nucleus, plastid	61.22	61.46
VIT_14s0108g00940.t01	Wine grape	plastid	63.55	61.25
TraesCS6D01G287000.1	Wheat	plastid	52.14	60.63
HORVU6Hr1G075950.4	Barley	plastid	52.53	60.0
TraesCS6B01G336400.1	Wheat	plastid	52.4	59.94
TraesCS6A01G307800.1	Wheat	plastid	52.53	59.91
Os02t0744700-01	Rice	nucleus	51.49	58.64
Zm00001d052263_P001	Maize	plastid	52.01	57.29
OQU91730	Sorghum	cytosol	50.45	56.87
EES05532	Sorghum	plastid	51.75	56.68
Zm00001d018033_P001	Maize	plastid	50.19	56.25
Os10t0437600-00	Rice	plastid	52.92	54.47
TraesCS1B01G155700.3	Wheat	plastid	52.4	54.37
TraesCS1A01G137200.1	Wheat	plastid	52.79	54.19
TraesCS1D01G138100.2	Wheat	plastid	52.66	54.06
Zm00001d014150_P005	Maize	plastid	53.05	52.84
Zm00001d037234_P005	Maize	plastid	51.36	52.45
KXG19644	Sorghum	plastid	52.14	52.21
TraesCS7B01G093800.2	Wheat	plastid	53.05	51.25
TraesCS7A01G189000.1	Wheat	plastid	52.66	51.01
TraesCS7D01G190100.1	Wheat	plastid	52.66	50.81
GSMUA_Achr1P24640_001	Banana	cytosol	12.84	50.0
Os06t0229800-01	Rice	plastid	52.4	49.88
HORVU1Hr1G035960.19	Barley	cytosol, plastid	51.88	49.81
HORVU7Hr1G038420.1	Barley	plastid	52.27	47.08
Bra009747.1-P	Field mustard	plastid	34.37	40.71
Bra010189.1-P	Field mustard	nucleus	28.92	30.46
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	15.05	23.15
Bra021017.1-P	Field mustard	plastid	22.83	17.25
Bra024412.1-P	Field mustard	plastid	11.28	14.67
Bra016818.1-P	Field mustard	cytosol	22.7	13.33

Protein Annotations

EnsemblPlants:Bra039138.1	EnsemblPlants:Bra039138.1-P	EnsemblPlantsGene:Bra039138	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Glyco_trans_1	InterPro:Starch_synth_cat_dom
KEGG:00500+2.4.1.21	PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	PFAM:PF00534	PFAM:PF08323	SEG:seg
SUPFAM:SSF53756	UniParc:UPI0002547761	UniProt:M4FDG7	MapMan:50.2.4	:	:

Description

AT3G01180 (E=1e-205) AtSS2 | AtSS2 (starch synthase 2); transferase, transferring glycosyl groups

Coordinates

chrA05:-:23798798..23801933

Molecular Weight (calculated)

85127.6 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.433

Length

771 amino acids

Sequence
(BLAST)

001: MASVAESSYP LLCQIKSQRR VTSSTLRNSS LVRVSPPHFA SGSLSFRRRS FVLGHRWKFA RCVEATGPDS SGSPSGDDEQ EDALQATIDK SKKVLDMQRN
101: LLHQIAERRK LVSSIKESTP NLVDGKPSAK EDANTADAAK NDKMDGDGNG SVSSSSYVKS SLNKEPEATT PLKSSKQSSP SAKSPEKEKP SGVANNGKPW
201: SSVVASSVDP PYKPSSTVTS SKKTSDPVTS SVNPSKSPAG AFWSDPLPSY LTKTPETPSI KTEEYMETKE EMAHEEASSD TDEPSKDEEQ PPPLAGANVM
301: NVILVAAECA PFSKTGGLGD VAGALPKALA RRGHRVMVVV PRYAEYEEAK DVGVRKRYKV AGQDMEVMYF HAYIDGVDFV FIDSPVFRHL SSNIYGGNRL
401: DILKRMVLFC KAAVEVPWYV PCGGVCYGDG NLAFIANDWH TALLPVYLKA YYRDHGLMKY TRSVLVIHNI AHQGRGPVDD FSYVDLPGHY LDSFKLYDPV
501: GGEHFNIFAA GLKAADRVLT VSHGYSWEFR GIVNGIDTKE WNPKFDLHLH SDDYTNYSLE TLQIGKPQCK AALQKELGLP VRPDVPLIGF IGRLDHQKGV
601: DLIAEAVPWM MSQDVQLVML GTGRPDLEEV LRQMEHQYRD KARGWVGFSV KTAHRITAGA DILLMPSRFE PCGLNQLYAM NYGTIPVVHA VGGLRDTVQQ
701: FDPYSETGLG WTFDSAEAGK LIHALGNCLL TYREYKESWE GLQRRGMTQD LSWDNAAEKY EEVLVAAKYQ W

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.