Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G190100.1 | Wheat | plastid | 95.48 | 95.12 |
| TraesCS7B01G093800.2 | Wheat | plastid | 95.23 | 94.99 |
| HORVU7Hr1G038420.1 | Barley | plastid | 91.21 | 84.81 |
| KRH01182 | Soybean | cytosol | 25.75 | 77.07 |
| KXG19644 | Sorghum | plastid | 69.72 | 72.08 |
| Zm00001d037234_P005 | Maize | plastid | 66.08 | 69.67 |
| CDY34695 | Canola | plastid | 12.19 | 67.83 |
| Os06t0229800-01 | Rice | plastid | 67.09 | 65.93 |
| Bra021486.1-P | Field mustard | endoplasmic reticulum | 17.21 | 64.93 |
| TraesCS6A01G307800.1 | Wheat | plastid | 54.65 | 64.35 |
| CDY43274 | Canola | plastid | 51.88 | 59.17 |
| CDY37538 | Canola | plastid | 49.75 | 58.49 |
| KRG93537 | Soybean | plastid | 52.64 | 54.13 |
| KRH18473 | Soybean | plastid | 52.26 | 53.61 |
| Solyc02g088000.2.1 | Tomato | nucleus, plastid | 51.01 | 52.86 |
| PGSC0003DMT400003356 | Potato | cytosol | 50.75 | 52.67 |
| Bra039138.1-P | Field mustard | plastid | 51.01 | 52.66 |
| AT3G01180.1 | Thale cress | plastid | 52.14 | 52.4 |
| VIT_14s0108g00940.t01 | Wine grape | plastid | 52.64 | 52.38 |
| KRH15937 | Soybean | plastid | 8.17 | 50.0 |
| TraesCS1A01G137200.1 | Wheat | plastid | 47.11 | 49.93 |
| CDY55806 | Canola | plastid | 33.42 | 48.1 |
| Bra021487.1-P | Field mustard | cytosol | 20.6 | 44.2 |
| TraesCS7A01G120300.1 | Wheat | plastid | 32.04 | 39.6 |
| CDY34693 | Canola | endoplasmic reticulum, golgi | 19.35 | 38.69 |
| TraesCS7A01G070100.1 | Wheat | plastid | 27.14 | 35.76 |
| TraesCS4A01G418200.1 | Wheat | plastid | 26.76 | 35.21 |
| TraesCS2A01G373600.1 | Wheat | plastid | 25.38 | 33.72 |
| TraesCS1A01G353300.1 | Wheat | cytosol | 20.23 | 23.47 |
| TraesCS2A01G468800.1 | Wheat | plastid | 21.23 | 12.93 |
| TraesCS1A01G091500.1 | Wheat | plastid | 20.98 | 10.25 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G189000.1 | EnsemblPlantsGene:TraesCS7A01G189000 | Gene3D:3.40.50.2000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004373 |
| GO:GO:0016740 | HAMAP:MF_00484 | InterPro:GS/SS | InterPro:Glyco_trans_1 | InterPro:Starch_synth_cat_dom | KEGG:00500+2.4.1.21 |
| PANTHER:PTHR12526 | PANTHER:PTHR12526:SF371 | PFAM:PF00534 | PFAM:PF08323 | SEG:seg | SUPFAM:SSF53756 |
| TIGR:cd03791 | TIGRFAMs:TIGR02095 | MapMan:3.2.2.4.2 | : | : | : |
Description
No Description!
Coordinates
chr7A:+:145465456..145472269
Molecular Weight (calculated)
86983.7 Da
IEP (calculated)
6.657
GRAVY (calculated)
-0.406
Length
796 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAVASAAS FLALASASPG RSRRRARVSA PPPHAGAGRL HWPPWPPQRT ARDGGVAARA AGKKDARVDD DAASARQPRA RRGGAATKRR DPVKTLDRDA
101: AEGGAPAPPA PRQDAARPPS MNGTPVNGEN KSTGGGGATK DSGLPAPARA PHPSTQNRVP VNGENKANVA SPPTSIAEVV APDSAATISI SDKAPESVVP
201: AEKPPPSSGS NFVVSASAPR LDIDSDVEPE LKKGAVIVEE APNPKALSPP AAPAVQEDLW DFKKYIGFEE PVEAKDDGWA VADDAGSFEH HQNHDSGPLA
301: GENVMNVVVV AAECSPWCKT GGLGDVAGAL PKALAKRGHR VMVVVPRYGD YEEAYDVGVR KYYKAAGQDM EVNYFHAYID GVDFVFIDAP IFRHRQEDIY
401: GGSRQEIMKR MILFCKAAVE VPWHVPCGGV PYGDGNLVFI ANDWHTALLP VYLKAYYRDH GLMQYTRSIM VIHNIAHQGR GPVDEFPFTE LPEHYLEHFR
501: LYDPVGGEHA NYFAAGLKMA DQVVVVSPGY LWELKTVEGG WGLHDIIRQN DWKTRGIVNG IDNMEWNPEV DVHLQSDGYT NFSLSTLDSG KRQCKEALQR
601: ELGLQVRADV PLLGFIGRLD GQKGVEIIAD AMPWIVSQDV QLVMLGTGRH DLESMLRHFE REHHDKVRGW VGFSVRLAHR ITAGADALLM PSRFEPCGLN
701: QLYAMAYGTV PVVHAVGGLR DTVPPFDPFN HSGLGWTFDR AEAHKLIEAL GHCLRTYRDY KESWRGLQER GMSQDFSWEH AAKLYEDVLL KAKYQW
101: AEGGAPAPPA PRQDAARPPS MNGTPVNGEN KSTGGGGATK DSGLPAPARA PHPSTQNRVP VNGENKANVA SPPTSIAEVV APDSAATISI SDKAPESVVP
201: AEKPPPSSGS NFVVSASAPR LDIDSDVEPE LKKGAVIVEE APNPKALSPP AAPAVQEDLW DFKKYIGFEE PVEAKDDGWA VADDAGSFEH HQNHDSGPLA
301: GENVMNVVVV AAECSPWCKT GGLGDVAGAL PKALAKRGHR VMVVVPRYGD YEEAYDVGVR KYYKAAGQDM EVNYFHAYID GVDFVFIDAP IFRHRQEDIY
401: GGSRQEIMKR MILFCKAAVE VPWHVPCGGV PYGDGNLVFI ANDWHTALLP VYLKAYYRDH GLMQYTRSIM VIHNIAHQGR GPVDEFPFTE LPEHYLEHFR
501: LYDPVGGEHA NYFAAGLKMA DQVVVVSPGY LWELKTVEGG WGLHDIIRQN DWKTRGIVNG IDNMEWNPEV DVHLQSDGYT NFSLSTLDSG KRQCKEALQR
601: ELGLQVRADV PLLGFIGRLD GQKGVEIIAD AMPWIVSQDV QLVMLGTGRH DLESMLRHFE REHHDKVRGW VGFSVRLAHR ITAGADALLM PSRFEPCGLN
701: QLYAMAYGTV PVVHAVGGLR DTVPPFDPFN HSGLGWTFDR AEAHKLIEAL GHCLRTYRDY KESWRGLQER GMSQDFSWEH AAKLYEDVLL KAKYQW
001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP
Arabidopsis Description
GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.