Factsheet for TraesCS4A01G418200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 10944148

golgi: 25769308

gfp PMID: 10944148

SM Langeveld, R van Wijk, N Stuurman, JW Kijne, S de Pater

TNO department of Plant Biotechnology, Center for Phytotechnology UL/TNO, Leiden University, Wassenaarseweg 64, 2333 AL Leiden, The Netherlands. Langeveld@rulbim.keidenuniv.nl

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G064300.1	Wheat	plastid	96.86	97.02
TraesCS7A01G070100.1	Wheat	plastid	95.04	95.2
HORVU7Hr1G012380.5	Barley	plastid	94.21	94.53
Zm00001d045462_P001	Maize	plastid	82.15	81.61
Zm00001d033937_P002	Maize	plastid	82.15	81.61
EER87785	Sorghum	plastid	81.82	81.41
Os06t0133000-02	Rice	plastid	81.82	81.28
GSMUA_Achr1P06140_001	Banana	plastid	67.44	66.23
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	66.61	65.42
VIT_02s0025g02790.t01	Wine grape	plastid	64.13	64.13
GSMUA_Achr9P20780_001	Banana	plastid	64.79	63.84
Solyc08g083320.2.1	Tomato	plastid	62.81	63.12
PGSC0003DMT400031568	Potato	plastid	63.31	63.1
KRG92546	Soybean	plastid	62.31	62.31
KRH34245	Soybean	plastid	62.15	61.84
VIT_15s0048g02600.t01	Wine grape	plastid	62.64	61.73
KRH47803	Soybean	nucleus	62.48	61.07
KRH06370	Soybean	nucleus, plastid	62.15	60.74
AT1G32900.1	Thale cress	plastid	60.99	60.49
TraesCS2A01G373600.1	Wheat	plastid	58.84	59.43
CDY71840	Canola	plastid	29.59	59.27
GSMUA_Achr1P16610_001	Banana	plastid	29.75	59.02
GSMUA_Achr1P16620_001	Banana	cytosol	19.17	51.79
Bra010189.1-P	Field mustard	nucleus	62.15	51.37
CDX73274	Canola	plastid	32.07	50.79
TraesCS7A01G120300.1	Wheat	plastid	33.39	31.37
TraesCS6A01G307800.1	Wheat	plastid	34.21	30.62
TraesCS1A01G137200.1	Wheat	plastid	35.37	28.5
TraesCS7A01G189000.1	Wheat	plastid	35.21	26.76
TraesCS1A01G353300.1	Wheat	cytosol	24.96	22.01
TraesCS2A01G468800.1	Wheat	plastid	24.63	11.4
TraesCS1A01G091500.1	Wheat	plastid	23.47	8.72

Protein Annotations

EnsemblPlants:TraesCS4A01G418200.1	EnsemblPlantsGene:TraesCS4A01G418200	Gene3D:3.40.50.2000	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0016740	HAMAP:MF_00484	InterPro:GS/SS	InterPro:Glyco_trans_1	InterPro:Starch_synth_cat_dom	KEGG:00500+2.4.1.21
PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	PFAM:PF00534	PFAM:PF08323	SEG:seg	SUPFAM:SSF53756
TIGR:cd03791	TIGRFAMs:TIGR02095	MapMan:3.2.2.4.5	:	:	:

Description

No Description!

Coordinates

chr4A:-:688097442..688100234

Molecular Weight (calculated)

66330.0 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.156

Length

605 amino acids

Sequence
(BLAST)

001: MAALVTSQLA TSGTVLGITD RFRRAGFQGV RPRSPADAPL GMRTTGASAA PKQQSRKAHR GTRRCLSMVV RATGSAGMNL VFVGAEMAPW SKTGGLGDVL
101: GGLPPAMAAN GHRVMVISPR YDQYKDAWDT SVVSEIKVAD EYERVRYFHC YKRGVDRVFV DHPCFLEKVR GKTKEKIYGP DAGTDYEDNQ LRFSLLCQAA
201: LEAPRILDLN NNPYFSGPYG EDVVFVCNDW HTGLLACYLK SNYQSSGIYR TAKVAFCIHN ISYQGRFSFD DFAQLNLPDR FKSSFDFIDG YDKPVEGRKI
301: NWMKAGILQA DKVLTVSPYY AEELISGEAR GCELDNIMRL TGITGIVNGM DVSEWDPAKD KFLAANYDVT TALEGKALNK EALQAEVGLP VDRKVPLVAF
401: IGRLEEQKGP DVMIAAIPEI LKEEDVQIVL LGTGKKKFER LLKSVEEKFP SKVRAVVRFN APLAHQMMAG ADVLAVTSRF EPCGLIQLQG MRYGTPCACA
501: STGGLVDTIM EGKTGFHMGH LSVDCNVVEP ADVKKVVTTL KRAVKVVGTP AYHEMVKNCM IQDLSWKGPA KNWEDVLLEL GVEGSEPGVI GEEIAPLAME
601: NVAAP

Best Arabidopsis Sequence Match ( AT1G32900.1 )
(BLAST)

001: MATVTASSNF VSRTSLFNNH GASSCSDVAQ ITLKGQSLTH CGLRSFNMVD NLQRRSQAKP VSAKSSKRSS KVKTAGKIVC EKGMSVIFIG AEVGPWSKTG
101: GLGDVLGGLP PALAARGHRV MTICPRYDQY KDAWDTCVVV QIKVGDKVEN VRFFHCYKRG VDRVFVDHPI FLAKVVGKTG SKIYGPITGV DYNDNQLRFS
201: LLCQAALEAP QVLNLNSSKY FSGPYGEDVV FVANDWHTAL LPCYLKSMYQ SRGVYMNAKV VFCIHNIAYQ GRFAFDDYSL LNLPISFKSS FDFMDGYEKP
301: VKGRKINWMK AAILEAHRVL TVSPYYAQEL ISGVDRGVEL HKYLRMKTVS GIINGMDVQE WNPSTDKYID IKYDITTVTD AKPLIKEALQ AAVGLPVDRD
401: VPVIGFIGRL EEQKGSDILV EAISKFMGLN VQMVILGTGK KKMEAQILEL EEKFPGKAVG VAKFNVPLAH MITAGADFII VPSRFEPCGL IQLHAMRYGT
501: VPIVASTGGL VDTVKDGYTG FHIGRFNVKC EVVDPDDVIA TAKAVTRAVA VYGTSAMQEM VKNCMDQDFS WKGPARLWEK VLLSLNVAGS EAGTEGEEIA
601: PLAKENVATP

Arabidopsis Description

GBSS1Granule-bound starch synthase 1, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9MAQ0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.