Factsheet for Zm00001d033937_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045462_P001	Maize	plastid	100.0	100.0
EER87785	Sorghum	plastid	93.6	93.75
Os06t0133000-02	Rice	plastid	82.92	82.92
HORVU7Hr1G012380.5	Barley	plastid	81.61	82.42
TraesCS4A01G418200.1	Wheat	plastid	81.61	82.15
TraesCS7D01G064300.1	Wheat	plastid	81.12	81.79
TraesCS7A01G070100.1	Wheat	plastid	80.79	81.46
GSMUA_Achr1P06140_001	Banana	plastid	67.32	66.56
VIT_02s0025g02790.t01	Wine grape	plastid	66.01	66.45
GSMUA_Achr1P08190_001	Banana	cytosol, plastid	67.16	66.4
GSMUA_Achr9P20780_001	Banana	plastid	64.86	64.33
Solyc08g083320.2.1	Tomato	plastid	63.38	64.12
PGSC0003DMT400031568	Potato	plastid	63.55	63.76
VIT_15s0048g02600.t01	Wine grape	plastid	64.04	63.52
KRH34245	Soybean	plastid	62.56	62.66
KRG92546	Soybean	plastid	62.23	62.64
AT1G32900.1	Thale cress	plastid	62.73	62.62
KRH47803	Soybean	nucleus	63.38	62.36
KRH06370	Soybean	nucleus, plastid	63.22	62.2
CDY71840	Canola	plastid	29.56	59.6
Zm00001d019479_P004	Maize	plastid	61.25	59.58
GSMUA_Achr1P16610_001	Banana	plastid	29.56	59.02
Bra010189.1-P	Field mustard	nucleus	63.71	53.01
GSMUA_Achr1P16620_001	Banana	cytosol	19.38	52.68
Zm00001d029360_P001	Maize	cytosol	21.18	51.6
CDX73274	Canola	plastid	32.18	51.31
Zm00001d033690_P001	Maize	cytosol, plastid	28.57	51.18
Zm00001d027242_P002	Maize	plastid	38.59	40.1
Zm00001d045261_P006	Maize	plastid	33.17	36.07
Zm00001d018033_P001	Maize	plastid	33.83	29.94
Zm00001d052263_P001	Maize	plastid	33.83	29.43
Zm00001d037234_P005	Maize	plastid	33.33	26.89
Zm00001d014150_P005	Maize	plastid	33.83	26.61
Zm00001d010821_P002	Maize	plastid	24.96	16.72
Zm00001d051976_P002	Maize	plastid	11.33	13.17
Zm00001d026337_P013	Maize	plastid	23.15	11.84
Zm00001d002256_P012	Maize	plastid	22.99	11.78
Zm00001d000002_P002	Maize	plastid	23.65	8.59

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.5	Gene3D:3.40.50.2000	EntrezGene:541854	ProteinID:AAQ06291.1	ProteinID:AQL02302.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
GO:GO:0033840	GO:GO:0102502	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	ProteinID:ONM09003.1
PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF452	UniProt:Q5NKP6	SUPFAM:SSF53756
InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000049D9C1	EnsemblPlantsGene:Zm00001d033937	EnsemblPlants:Zm00001d033937_P002	EnsemblPlants:Zm00001d033937_T002
SEG:seg	:	:	:	:	:

Description

Granule-bound starch synthase 1 chloroplastic/amyloplastic

Coordinates

chr1:+:279124552..279128540

Molecular Weight (calculated)

66613.1 Da

IEP (calculated)

7.012

GRAVY (calculated)

-0.144

Length

609 amino acids

Sequence
(BLAST)

001: MAALATSQLV ATRAGLGVPD ASTFRRGAAQ GLRGGRTASA ADTLSMRTSA RAAPRLQHQQ QQQARRGARF PSLVVCASAG MNVVFVGAEM APWSKTGGLG
101: DVLGGLPPAM AANGHRVMVV SPRYDQYKDA WDTSVVSEIK MGDRYETVRF FHCYKRGVDR VFVDHPLFLE RVWGKTEEKI YGPDAGTDYR DNQLRFSLLC
201: QAALEAPRIL SLNNNPYFSG PYGEDVVFVC NDWHTGPLSC YLKSNYQSHG IYRDAKTAFC IHNISYQGRF AFSDYPELNL PERFKSSFDF IDGYEKPVEG
301: RKINWMKAGI LEADRVLTVS PYYAEELISG IARGCELDNI MRLTGITGIV NGMDVSEWDP SRDKYIAVKY DVSTAVEAKA LNKEALQAEV GLPVDRNIPL
401: VAFIGRLEEQ KGPDVMAAAI PQLMEMVEDV QIVLLGTGKK KFERMLMSAE EKFPGKVRAV VKFNAALAHH IMAGADVLAV TSRFEPCGLI QLQGMRYGTP
501: CACASTGGLV DTIIEGKTGF HMGRLSVDCN VVEPADVKKV ATTLQRAIKV VGTPAYEEMV RNCMIQDLSW KGPAKNWENV LLSLGVAGGE PGVEGEEIAP
601: LAKENVAAP

Best Arabidopsis Sequence Match ( AT1G11720.1 )
(BLAST)

0001: MISYFLNQDF SRKKQGRMAA SGPKSSGPRG FGRRTTVGSA QKRTQKKNGE KDSNATSTAT NEVSGISKLP AAKVDVQKQS SVVLNERNVL DRSDIEDGSD
0101: RLDKKTTDDD DLLEQKLKLE RENLRRKEIE TLAAENLARG DRMFVYPVIV KPDEDIEVFL NRNLSTLNNE PDVLIMGAFN EWRWKSFTRR LEKTWIHEDW
0201: LSCLLHIPKE AYKMDFVFFN GQSVYDNNDS KDFCVEIKGG MDKVDFENFL LEEKLREQEK LAKEEAERER QKEEKRRIEA QKAAIEADRA QAKAETQKRR
0301: ELLQPAIKKA VVSAENVWYI EPSDFKAEDT VKLYYNKRSG PLTNSKELWL HGGFNNWVDG LSIVVKLVNA ELKDVDPKSG NWWFAEVVVP GGALVIDWVF
0401: ADGPPKGAFL YDNNGYQDFH ALVPQKLPEE LYWLEEENMI FRKLQEDRRL KEEVMRAKME KTARLKAETK ERTLKKFLLS QKDVVYTEPL EIQAGNPVTV
0501: LYNPANTVLN GKPEVWFRGS FNRWTHRLGP LPPQKMEATD DESSHVKTTA KVPLDAYMMD FVFSEKEDGG IFDNKNGLDY HLPVVGGISK EPPLHIVHIA
0601: VEMAPIAKVG GLGDVVTSLS RAVQELNHNV DIVFPKYDCI KHNFVKDLQF NRSYHWGGTE IKVWHGKVEG LSVYFLDPQN GLFQRGCVYG CADDAGRFGF
0701: FCHAALEFLL QGGFHPDILH CHDWSSAPVS WLFKDHYTQY GLIKTRIVFT IHNLEFGANA IGKAMTFADK ATTVSPTYAK EVAGNSVISA HLYKFHGIIN
0801: GIDPDIWDPY NDNFIPVPYT SENVVEGKRA AKEELQNRLG LKSADFPVVG IITRLTHQKG IHLIKHAIWR TLERNGQVVL LGSAPDPRIQ NDFVNLANQL
0901: HSSHGDRARL VLTYDEPLSH LIYAGADFIL VPSIFEPCGL TQLIAMRYGA VPVVRKTGGL FDTVFDVDHD KERAQAQVLE PNGFSFDGAD APGVDYALNR
1001: AISAWYDGRE WFNSLCKTVM EQDWSWNRPA LEYLELYHSA RK

Arabidopsis Description

ATSS3SS3 [Source:UniProtKB/TrEMBL;Acc:A0A178W4M9]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.