Factsheet for Zm00001d045261_P006

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870
nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G018600.1	Wheat	cytosol	82.86	89.06
KXG19354	Sorghum	plastid	98.21	85.01
HORVU7Hr1G025390.4	Barley	cytosol, plastid	86.61	84.35
Os06t0160700-01	Rice	plastid	87.68	76.6
TraesCS7A01G120300.1	Wheat	plastid	86.79	75.47
TraesCS7D01G117800.1	Wheat	plastid	86.79	74.2
VIT_16s0098g01780.t01	Wine grape	plastid	69.82	61.77
Solyc03g083090.2.1	Tomato	plastid	68.57	59.91
PGSC0003DMT400047731	Potato	plastid	68.04	59.44
AT5G24300.1	Thale cress	plastid	68.57	58.9
KRH64431	Soybean	plastid	68.21	58.68
Bra009747.1-P	Field mustard	plastid	68.04	58.53
CDX88091	Canola	plastid	68.04	58.53
KRH53506	Soybean	plastid	66.25	58.52
CDX80428	Canola	plastid	67.68	58.22
GSMUA_Achr3P03290_001	Banana	plastid	68.93	55.86
KRH16258	Soybean	extracellular	13.21	54.41
Zm00001d018033_P001	Maize	plastid	45.0	36.63
Zm00001d052263_P001	Maize	plastid	45.71	36.57
Zm00001d033937_P002	Maize	plastid	36.07	33.17
Zm00001d045462_P001	Maize	plastid	36.07	33.17
Zm00001d037234_P005	Maize	plastid	43.39	32.19
Zm00001d029360_P001	Maize	cytosol	14.11	31.6
Zm00001d014150_P005	Maize	plastid	43.39	31.4
Zm00001d033690_P001	Maize	cytosol, plastid	18.75	30.88
Zm00001d019479_P004	Maize	plastid	33.75	30.19
Zm00001d027242_P002	Maize	plastid	21.25	20.31
Zm00001d010821_P002	Maize	plastid	27.5	16.94
Zm00001d051976_P002	Maize	plastid	12.32	13.17
Zm00001d002256_P012	Maize	plastid	25.71	12.12
Zm00001d026337_P013	Maize	plastid	25.36	11.92
Zm00001d000002_P002	Maize	plastid	26.79	8.94

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	UniProt:A0A1D6NUU8	ProteinID:AQL01913.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010021	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	HAMAP:MF_00484	PFAM:PF00534
PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF431	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI000844D5BC	EnsemblPlantsGene:Zm00001d045261	EnsemblPlants:Zm00001d045261_P006	EnsemblPlants:Zm00001d045261_T006	:	:

Description

starch synthase IStarch synthase I

Coordinates

chr9:+:17401885..17412505

Molecular Weight (calculated)

62110.9 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.155

Length

560 amino acids

Sequence
(BLAST)

001: MATPSAVGAA GVLGLEPEGI AEGSIDNTVV VASEQDSEIV VGKEQARAKV TQNIVFVTGE ASPYAKSGGL GDVCGSLPVA LAARGHRVMV VMPRYLNGTS
101: DKNYANAFYT EKHIRIPCFG GEHEVTFFHE YRDSVDWVFV DHPSYHRPGN LYGDKFGAFG DNQFRYTLLC YAACEAPLVL ELGGYIYGQN CMFVVNDWHA
201: SLVPVLLAAK YRPYGVYKDS RSILVIHNLA HQGVEPASTY PDLGLPPEWY GALEWVFPEW ARRHALDKGE AVNFLKGAVV TADRIVTVSK GYSWEVTTAE
301: GGQGLNELLS SRKSVLNGIV NGIDINDWNP ATDKCIPCHY SVDDLSGKAK CKGALQKELG LPIRPDVPLI GFIGRLDYQK GIDLIQLIIP DLMREDVQFV
401: MLGSGDPELE DWMRSTESIF KDKFRGWVGF SVPVSHRITA GCDILLMPSR FEPCGLNQLY AMQYGTVPVV HATGGLRDTV ENFNPFGENG EQGTGWAFAP
501: LTTENMLWTL RTAISTYREH KSSWEGLMKR GMSKDFTWDH AAEQYEQIFQ WAFIDRPYVM

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.