Factsheet for Bra009747.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88091	Canola	plastid	100.0	100.0
CDX80428	Canola	plastid	96.31	96.31
AT5G24300.1	Thale cress	plastid	89.71	89.57
TraesCS7B01G018600.1	Wheat	cytosol	56.22	70.25
Zm00001d045261_P006	Maize	plastid	58.53	68.04
VIT_16s0098g01780.t01	Wine grape	plastid	65.9	67.77
KRH53506	Soybean	plastid	63.29	64.98
PGSC0003DMT400047731	Potato	plastid	63.75	64.74
Solyc03g083090.2.1	Tomato	plastid	63.29	64.27
KRH64431	Soybean	plastid	64.21	64.21
HORVU7Hr1G025390.4	Barley	cytosol, plastid	56.68	64.17
Os06t0160700-01	Rice	plastid	59.14	60.06
KXG19354	Sorghum	plastid	58.99	59.35
TraesCS7A01G120300.1	Wheat	plastid	57.3	57.92
TraesCS7D01G117800.1	Wheat	plastid	57.45	57.1
GSMUA_Achr3P03290_001	Banana	plastid	59.75	56.3
KRH16258	Soybean	extracellular	11.06	52.94
Bra021486.1-P	Field mustard	endoplasmic reticulum	13.21	40.76
Bra039138.1-P	Field mustard	plastid	40.71	34.37
Bra010189.1-P	Field mustard	nucleus	31.95	28.42
Bra021487.1-P	Field mustard	cytosol	13.52	23.72
Bra019836.1-P	Field mustard	endoplasmic reticulum, vacuole	15.82	20.56
Bra021017.1-P	Field mustard	plastid	26.27	16.76
Bra024412.1-P	Field mustard	plastid	12.14	13.32
Bra016818.1-P	Field mustard	cytosol	24.73	12.26

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	ProteinID:AAO42675	ProteinID:AAO42675.1	EMBL:AY161289
EnsemblPlantsGene:Bra009747	EnsemblPlants:Bra009747.1	EnsemblPlants:Bra009747.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004373
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0010021	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252
InterPro:GS/SS	InterPro:Glyco_trans_1	UniProt:M4CZV0	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF431	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095	UniParc:UPI000253F175

Description

AT5G24300 (E=0.0) SSI1, SSI, ATSS1 | SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1); starch synthase/ transferase, transferring glycosyl groups

Coordinates

chrA06:+:16995308..16998893

Molecular Weight (calculated)

71654.7 Da

IEP (calculated)

5.381

GRAVY (calculated)

-0.217

Length

651 amino acids

Sequence
(BLAST)

001: MASLQISGGS VRFVAGFNRT GCIRPICSLG FPHSRSRFSI GRPLLLRRAS VSGESETDDI TDAERDVSAS SSASLLGFQL VPPGDQEIIS TNTTKETTHQ
101: EETSDATDES EMADFGVPGN RAVEEGAAEV EYTSVKAEVI NNLVFVTSEA APYSKTGGLG DVCGSLPIAL AGRGHRVMVI SPRYLNGTSA DKNYARAKDL
201: GVRVTVHCFG GSQEVSFYHE YRDGVDWVFI DHQSYHRPGN PYGDSKGAFG DNQFRFTLLC HAACEAPLVL PLGGFTYGEK SLFLVNDWHA GLVPILLAAK
301: YRPYGVYKDA RSILIIHNLA HQGVEPAATY SNLGLPSEWY GAVGWVFPTW ARTHALDTGE AVNVLKGAIV TSDRIITVSQ GYAWEITTVE GGYGLQDLLS
401: SRKSVINGIT NGINIDEWDP SKDEHIPFHY SLDDYSNKVK CKMALQKELG LPIRPECPMI GFIGRLDYQK GIDLIQTAGP DLMVDDIQFV MLGSGDPKCE
501: SWMRSMEETY RDKFRGWVGF NVPISHRITA GCDILLMPSR FEPCGLNQLY AMRYGTIPVV HATGGLRDTV ENFNPYAEGG AGAGTGWVFS PLSKDSMVSA
601: LRLAAATYRE YKESWEGLMR RGMSRNYSWE NAAVQYEQVF QWVFMDPPYI N

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.