CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045261_P006	Maize	plastid	85.01	98.21
TraesCS7B01G018600.1	Wheat	cytosol	71.41	88.68
HORVU7Hr1G025390.4	Barley	cytosol, plastid	76.66	86.26
Os06t0160700-01	Rice	plastid	81.92	82.68
TraesCS7A01G120300.1	Wheat	plastid	81.3	81.68
TraesCS7D01G117800.1	Wheat	plastid	81.45	80.46
VIT_16s0098g01780.t01	Wine grape	plastid	60.9	62.24
Solyc03g083090.2.1	Tomato	plastid	59.81	60.37
KRH53506	Soybean	plastid	59.04	60.25
AT5G24300.1	Thale cress	plastid	60.59	60.12
PGSC0003DMT400047731	Potato	plastid	59.35	59.91
KRH64431	Soybean	plastid	59.97	59.6
Bra009747.1-P	Field mustard	plastid	59.35	58.99
CDX88091	Canola	plastid	59.35	58.99
CDX80428	Canola	plastid	59.35	58.99
GSMUA_Achr3P03290_001	Banana	plastid	61.36	57.45
KRH16258	Soybean	extracellular	11.28	53.68
EES05532	Sorghum	plastid	39.57	36.36
OQU91730	Sorghum	cytosol	36.94	34.94
EER87785	Sorghum	plastid	31.07	33.06
KXG19644	Sorghum	plastid	39.1	32.86
EER98410	Sorghum	plastid	28.75	30.64
OQU78343	Sorghum	plastid	24.42	17.38
KXG31317	Sorghum	plastid	16.69	15.47
KXG27148	Sorghum	mitochondrion, plastid	22.87	12.43
KXG24650	Sorghum	plastid	23.34	8.97

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.1	Gene3D:3.40.50.2000	UniProt:A0A194YHA2	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009011	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0010021	GO:GO:0016740
GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1	EnsemblPlants:KXG19354	ProteinID:KXG19354
ProteinID:KXG19354.1	HAMAP:MF_00484	PFAM:PF00534	PFAM:PF08323	PANTHER:PTHR12526	PANTHER:PTHR12526:SF431
MetaCyc:PWY-622	EnsemblPlantsGene:SORBI_3010G047700	SUPFAM:SSF53756	SignalP:SignalP-noTM	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI0007F292B5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:3694262..3702940

Molecular Weight (calculated)

71084.8 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.182

Length

647 amino acids

Sequence
(BLAST)

001: MATPSAVGAA CLVLARAAAG LGLGPGRGGD RARPRRLQRV VRRRCVAELS REGPAPTPRP LPPALLAPPL VPAFLAPPSE PEGEPASTPP PLPDAGLGDL
101: GLQPEGIAEG SIDETVVVAS EQDSEIVVGK EQARAKVTQS IVFVTGEASP YAKSGGLGDV CGSLPVALAA RGHRVMVVMP RYLNGTSDKN YANAFYTEKH
201: IRIPCFGGEH EVTFFHEYRD SVDWVFVDHP SYHRPGNLYG DKFGAFGDNQ FRYTLLCYAA CEAPLVLELG GYIYGQNCMF VVNDWHASLV PVLLAAKYRP
301: YGVYKDSRSI LVIHNLAHQG VEPASTYPDL GLPPEWYGAL EWVFPEWARR HALDKGEAVN FLKGAVVTAD RIVTVSKGYS WEVTTAEGGQ GLNELLSSRK
401: SVLNGIVNGI DINDWNPATD KCIPCHYSVD DLSGKAKCKS ALQKELGLPI RPEVPLIGFI GRLDYQKGID LIQLIIPHLM RDDVQFVMLG SGDPELEDWM
501: RSTESDFKDK FRGWVGFSVP VSHRITAGCD ILLMPSRFEP CGLNQLYAMQ YGTVPVVHAT GGLRDTVENF NPFGENGEQG TGWAFAPLTT ENMLWTLRTA
601: ISTYKEHKSS WEGLMKRGMS KDFTWDHAAE QYEQIFQWAF IDRPYVM

Best Arabidopsis Sequence Match ( AT5G24300.2 )
(BLAST)

001: MASLQISGSV KFEPFVGFNR IRHFRPIASL GFPRFRRRFS IGRSLLLRRS SSFSGDSRES DEERFITDAE RDGSGSVLGF QLTPPGDQQT VSTSTGEITH
101: HEEKKEAIDQ IVMADFGVPG NRAVEEGAAE VGIPSGKAEV VNNLVFVTSE AAPYSKTGGL GDVCGSLPIA LAGRGHRVMV ISPRYLNGTA ADKNYARAKD
201: LGIRVTVNCF GGSQEVSFYH EYRDGVDWVF VDHKSYHRPG NPYGDSKGAF GDNQFRFTLL CHAACEAPLV LPLGGFTYGE KSLFLVNDWH AGLVPILLAA
301: KYRPYGVYKD ARSILIIHNL AHQGVEPAAT YTNLGLPSEW YGAVGWVFPT WARTHALDTG EAVNVLKGAI VTSDRIITVS QGYAWEITTV EGGYGLQDLL
401: SSRKSVINGI TNGINVDEWN PSTDEHIPFH YSADDVSEKI KCKMALQKEL GLPIRPECPM IGFIGRLDYQ KGIDLIQTAG PDLMVDDIQF VMLGSGDPKY
501: ESWMRSMEET YRDKFRGWVG FNVPISHRIT AGCDILLMPS RFEPCGLNQL YAMRYGTIPV VHGTGGLRDT VENFNPYAEG GAGTGTGWVF TPLSKDSMVS
601: ALRLAAATYR EYKQSWEGLM RRGMTRNYSW ENAAVQYEQV FQWVFMDPPY VS

Arabidopsis Description

SS1Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QN76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.