CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01180.1	EER88112	AT3G47620.1	21798944
AT3G01180.1	EES07255	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014150_P005	Maize	plastid	86.7	76.61
KRH01182	Soybean	cytosol	29.68	76.32
CDY34695	Canola	plastid	15.06	72.03
Bra021486.1-P	Field mustard	endoplasmic reticulum	20.76	67.3
TraesCS1B01G155700.3	Wheat	plastid	71.78	66.08
TraesCS1D01G138100.2	Wheat	plastid	72.22	65.78
TraesCS1A01G137200.1	Wheat	plastid	71.78	65.38
Os10t0437600-00	Rice	plastid	70.61	64.49
HORVU1Hr1G035960.19	Barley	cytosol, plastid	70.91	60.4
CDY43274	Canola	plastid	58.19	57.02
CDY37538	Canola	plastid	55.99	56.57
GSMUA_Achr6P23190_001	Banana	cytosol	59.06	55.49
EES05532	Sorghum	plastid	55.56	53.98
KRH18473	Soybean	plastid	59.36	52.32
KRG93537	Soybean	plastid	58.48	51.68
PGSC0003DMT400003356	Potato	cytosol	57.89	51.63
Solyc02g088000.2.1	Tomato	nucleus, plastid	57.89	51.56
VIT_14s0108g00940.t01	Wine grape	plastid	59.06	50.5
Bra039138.1-P	Field mustard	plastid	56.87	50.45
GSMUA_Achr1P24650_001	Banana	mitochondrion	57.46	49.87
AT3G01180.1	Thale cress	plastid	57.46	49.62
KXG19644	Sorghum	plastid	53.22	47.27
KRH15937	Soybean	plastid	8.77	46.15
CDY55806	Canola	plastid	36.26	44.85
Bra021487.1-P	Field mustard	cytosol	22.51	41.51
KXG19354	Sorghum	plastid	34.94	36.94
CDY34693	Canola	endoplasmic reticulum, golgi	20.47	35.18
EER87785	Sorghum	plastid	29.82	33.55
EER98410	Sorghum	plastid	29.24	32.95
OQU78343	Sorghum	plastid	23.39	17.6
KXG31317	Sorghum	plastid	14.04	13.75
KXG27148	Sorghum	mitochondrion, plastid	22.37	12.85
KXG24650	Sorghum	plastid	22.51	9.14

Protein Annotations

KEGG:00500+2.4.1.21	MapMan:3.2.2.4.2	Gene3D:3.40.50.2000	UniProt:A0A1Z5S724	GO:GO:0003674	GO:GO:0003824
GO:GO:0004373	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016740	GO:GO:0016757	GO:GO:0019252	InterPro:GS/SS	InterPro:Glyco_trans_1
HAMAP:MF_00484	EnsemblPlants:OQU91730	ProteinID:OQU91730	ProteinID:OQU91730.1	PFAM:PF00534	PFAM:PF08323
PANTHER:PTHR12526	PANTHER:PTHR12526:SF542	EnsemblPlantsGene:SORBI_3001G239500	SUPFAM:SSF53756	InterPro:Starch_synth_cat_dom	TIGRFAMs:TIGR02095
UniParc:UPI000B8B9CF2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:24604170..24614347

Molecular Weight (calculated)

77272.1 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.389

Length

684 amino acids

Sequence
(BLAST)

001: MKQIAEKKKL LSTILDSSIH NEQEPLSGQS DGSLSNLNAN AEVTEIGYGS SQQSEFDTTY GESIYNQNEY YESSKHDGTD FSENYQYNSF PRAARSVYEL
101: EADNGMKQDY GVQLSQVSEH EQSVNEGTND DASGGVDVMN VILVAAECAP WSKTGGLGDV AGALPKALAR RGHRVMVVVP KYGDYEEPQE IGEPRSYLVA
201: GQDMEVKYYH AYIDGVDFVF IDNPVFHYVQ SEIYGGNRTD IWKRMVLLCK AAVEVQWYVP CGGFCYGDGN LVFIANDWHT ALLPVYLKAY YRDNGFMPYA
301: RSVLVIHNIA HQGRGPIDDF SYLDLPGHYM DQCKLYDPFG GDHLNIFAAG IRAADRLLTV SHGYAWELKT PDGGWGLHSI INENDWKFQG IVNGIDTTDW
401: NPRHDVHLQA DGYTNYSLET VQTGKAQCKE ALQKELGLPV RADVPVIAFI GRLDHQKGVD LIAEAMPWIA GQDVQLILLG TGRQDLEDTL RRLESQHYDR
501: VRGWVGFSVR LAHRMTAGAD ILLMPSRFEP CGLNQLYAMM YGTVPVVHAV GGLRDTVAHY NPYEEVGVGW TFEKAEANRM IDALGHCLNT FRNYRSSWEG
601: IQRRGMMQDL SWDNAAKLYE EVLLAAKYQW MVRVAQADLL LPDPNNRIKC EFWVYLLDKH SGWGFSWKEV NVRRKIQGKR RAFF

Best Arabidopsis Sequence Match ( AT3G01180.1 )
(BLAST)

001: MASVAESSFP LLCQIKTQRR INSSTLRHSR VSYHDLPSGS LSFRSRSFVL GHRCKCVSRV EASGSDDDEP EDALQATIDK SKKVLAMQRN LLHQIAERRK
101: LVSSIKESTP DLDDAKASSK QESASSVNAN TDATKKEIMD GDANGSVSPS TYGKSSLSKE PEAKTFSPST ESLKNRKQSS ASVISSSPVT SPQKPSDVAT
201: NGKPWSSVVA SSVDPPYKPS SVMTSPEKTS DPVTSPGKPS KSRAGAFWSD PLPSYLTKAP QTSTMKTEKY VEKTPDVASS ETNEPGKDEE KPPPLAGANV
301: MNVILVAAEC APFSKTGGLG DVAGALPKSL ARRGHRVMVV VPRYAEYAEA KDLGVRKRYK VAGQDMEVMY FHAFIDGVDF VFIDSPEFRH LSNNIYGGNR
401: LDILKRMVLF CKAAVEVPWY VPCGGVCYGD GNLAFIANDW HTALLPVYLK AYYRDHGIMK YTRSVLVIHN IAHQGRGPVD DFSYVDLPSH YLDSFKLYDP
501: VGGEHFNIFA AGLKAADRVL TVSHGYSWEV KTLEGGWGLH NIINENDWKF RGIVNGIDTQ EWNPEFDTYL HSDDYTNYSL ENLHIGKPQC KAALQKELGL
601: PVRPDVPLIG FIGRLDHQKG VDLIAEAVPW MMSQDVQLVM LGTGRPDLEE VLRQMEHQYR DKARGWVGFS VKTAHRITAG ADILLMPSRF EPCGLNQLYA
701: MNYGTIPVVH AVGGLRDTVQ QFDPYSETGL GWTFDSAEAG KLIHALGNCL LTYREYKESW EGLQRRGMTQ DLSWDNAAEK YEEVLVAAKY HW

Arabidopsis Description

SS2Starch synthase, chloroplastic/amyloplastic (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNS2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.