Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 87.56 | 91.03 |
| Zm00001d044836_P001 | Maize | nucleus | 74.37 | 82.07 |
| Os06t0226700-01 | Rice | nucleus | 77.41 | 78.81 |
| TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 72.84 | 77.15 |
| TraesCS7D01G187600.1 | Wheat | cytosol | 76.65 | 75.5 |
| HORVU7Hr1G038130.1 | Barley | nucleus | 75.89 | 74.75 |
| EES07255 | Sorghum | nucleus | 73.6 | 72.86 |
| TraesCS6A01G306500.1 | Wheat | nucleus | 72.84 | 71.04 |
| GSMUA_Achr4P00500_001 | Banana | nucleus | 44.67 | 64.71 |
| GSMUA_Achr7P20990_001 | Banana | nucleus | 41.88 | 61.57 |
| VIT_17s0000g06020.t01 | Wine grape | nucleus | 48.48 | 51.9 |
| CDY36943 | Canola | nucleus | 22.84 | 47.62 |
| Solyc03g116320.2.1 | Tomato | nucleus | 47.46 | 45.72 |
| PGSC0003DMT400083148 | Potato | nucleus | 47.46 | 45.61 |
| PGSC0003DMT400001613 | Potato | nucleus | 47.72 | 45.41 |
| KRH63357 | Soybean | nucleus | 45.18 | 44.72 |
| Solyc06g070900.2.1 | Tomato | nucleus | 46.95 | 44.47 |
| KRH56919 | Soybean | nucleus | 46.19 | 43.75 |
| KRH54542 | Soybean | nucleus | 45.18 | 43.63 |
| KRH03466 | Soybean | nucleus | 45.18 | 43.1 |
| CDY24170 | Canola | nucleus | 25.63 | 41.56 |
| Bra018126.1-P | Field mustard | nucleus | 43.65 | 36.91 |
| AT3G47620.1 | Thale cress | nucleus | 45.43 | 36.61 |
| EES07800 | Sorghum | plastid | 21.83 | 35.39 |
| EES11145 | Sorghum | plastid | 18.27 | 34.78 |
| EES05476 | Sorghum | plastid | 18.78 | 33.33 |
| EES10469 | Sorghum | plastid | 13.71 | 30.51 |
| EES01992 | Sorghum | nucleus | 23.1 | 28.0 |
| EER99208 | Sorghum | nucleus | 20.3 | 24.54 |
| OQU80770 | Sorghum | nucleus | 20.81 | 22.84 |
Protein Annotations
| MapMan:15.5.19 | EntrezGene:8065521 | UniProt:C5Z727 | ncoils:Coil | EnsemblPlants:EER88112 | ProteinID:EER88112 |
| ProteinID:EER88112.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | PFAM:PF03634 |
| PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | EnsemblPlantsGene:SORBI_3010G092100 | unigene:Sbi.4837 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI0001A893CF | RefSeq:XP_002436745.1 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr10:+:8132225..8138107
Molecular Weight (calculated)
40093.8 Da
IEP (calculated)
9.132
GRAVY (calculated)
-0.445
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVTGDASGG RRPNFPLQLL EKKKEEQPCS TSPAAVVGAG ANGSAGSGEM LQMKKVAPPK RTSTKDRHTK VDGRGRRIRM PAICAARVFQ LTRELGHKTD
101: GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SFSIPAHLRA AGLPGPRFGG ARGDPWERVV GLGFGGAEGP PSATSSASSP LLLSFHSGSV
201: GLDVSPSSSS AAASSDLSKK RRWEQEMQQQ QQQYQQQMAG YTQSQMPGTV WMVPSSNAQA AAVAGGGGSN ESIWTFPQTG SGGGGAATVY RGVPSGLHFM
301: NFPAPMALLP GAQQQLGLGG PVGGNENGSA SGGGGGAEGH MGILAALNAY RAHAVSDATP AAQNGAGGGG SSQHQQHGHG GGERQESMSP SDDS
101: GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SFSIPAHLRA AGLPGPRFGG ARGDPWERVV GLGFGGAEGP PSATSSASSP LLLSFHSGSV
201: GLDVSPSSSS AAASSDLSKK RRWEQEMQQQ QQQYQQQMAG YTQSQMPGTV WMVPSSNAQA AAVAGGGGSN ESIWTFPQTG SGGGGAATVY RGVPSGLHFM
301: NFPAPMALLP GAQQQLGLGG PVGGNENGSA SGGGGGAEGH MGILAALNAY RAHAVSDATP AAQNGAGGGG SSQHQQHGHG GGERQESMSP SDDS
001: MQKPTSSILN VIMDGGDSVG GGGGDDHHRH LHHHHRPTFP FQLLGKHDPD DNHQQQPSPS SSSSLFSLHQ HQQLSQSQPQ SQSQKSQPQT TQKELLQTQE
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
101: ESAVVAAKKP PLKRASTKDR HTKVDGRGRR IRMPALCAAR VFQLTRELGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN FTSLNISLRS SGSSMSLPSH
201: FRSAASTFSP NNIFSPAMLQ QQQQQQRGGG VGFHHPHLQG RAPTSSLFPG IDNFTPTTSF LNFHNPTKQE GDQDSEELNS EKKRRIQTTS DLHQQQQQHQ
301: HDQIGGYTLQ SSNSGSTATA AAAQQIPGNF WMVAAAAAAG GGGGNNNQTG GLMTASIGTG GGGGEPVWTF PSINTAAAAL YRSGVSGVPS GAVSSGLHFM
401: NFAAPMAFLT GQQQLATTSN HEINEDSNNN EGGRSDGGGD HHNTQRHHHH QQQHHHNILS GLNQYGRQVS GDSQASGSLG GGDEEDQQD
Arabidopsis Description
TCP14Transcription factor TCP14 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z00]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.