Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033976_P002 | Maize | nucleus | 96.17 | 95.36 |
| Zm00001d013302_P002 | Maize | nucleus | 86.38 | 89.04 |
| Os03t0742900-01 | Rice | vacuole | 87.23 | 86.86 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 85.11 | 85.84 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 84.68 | 85.04 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 83.83 | 84.91 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 84.26 | 83.54 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 48.09 | 66.47 |
| PGSC0003DMT400041976 | Potato | nucleus | 53.19 | 58.69 |
| KRG92683 | Soybean | nucleus | 56.6 | 58.59 |
| CDY10694 | Canola | mitochondrion | 42.98 | 58.05 |
| Solyc06g053830.2.1 | Tomato | nucleus | 52.77 | 56.88 |
| KRH34377 | Soybean | nucleus | 57.02 | 56.07 |
| Solyc06g008590.2.1 | Tomato | nucleus | 48.94 | 55.29 |
| CDY47148 | Canola | nucleus | 54.47 | 54.94 |
| PGSC0003DMT400013627 | Potato | nucleus | 49.79 | 54.67 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 55.32 | 54.62 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 53.62 | 54.55 |
| Bra040398.1-P | Field mustard | nucleus | 53.62 | 54.55 |
| Bra039855.1-P | Field mustard | nucleus | 54.04 | 54.51 |
| CDX89832 | Canola | nucleus | 51.49 | 54.02 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 54.04 | 53.81 |
| KRH32099 | Soybean | nucleus | 56.6 | 53.63 |
| Bra015298.1-P | Field mustard | nucleus | 51.06 | 53.57 |
| KRH68738 | Soybean | nucleus | 55.32 | 53.5 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 55.32 | 53.5 |
| KRG96977 | Soybean | nucleus | 52.34 | 53.48 |
| Bra030560.1-P | Field mustard | nucleus | 51.91 | 53.28 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 52.77 | 53.22 |
| CDY18214 | Canola | nucleus | 50.64 | 53.12 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 51.49 | 53.07 |
| Solyc09g083290.2.1 | Tomato | nucleus | 53.19 | 52.97 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 53.19 | 52.97 |
| Bra032520.1-P | Field mustard | nucleus | 51.06 | 52.86 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 51.49 | 52.84 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 51.49 | 52.84 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 53.19 | 52.74 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 53.19 | 52.74 |
| CDY32537 | Canola | nucleus | 51.06 | 52.63 |
| PGSC0003DMT400015610 | Potato | nucleus | 53.19 | 52.52 |
| Bra040122.1-P | Field mustard | nucleus | 50.21 | 52.44 |
| KRG95616 | Soybean | nucleus | 56.17 | 52.38 |
| KRH67289 | Soybean | nucleus | 56.6 | 52.36 |
| EES17334 | Sorghum | cytosol | 62.55 | 52.31 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 58.72 | 52.27 |
| AT4G14550.2 | Thale cress | nucleus | 51.91 | 52.14 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 53.62 | 52.07 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 54.89 | 51.81 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 51.91 | 51.48 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 53.19 | 51.44 |
| Solyc01g097290.2.1 | Tomato | nucleus | 54.89 | 51.39 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 51.91 | 50.83 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 51.91 | 50.83 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 52.77 | 50.41 |
| KXG20284 | Sorghum | plastid | 38.72 | 48.92 |
| KRH71337 | Soybean | nucleus | 34.04 | 47.06 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 45.11 | 45.89 |
| EES19135 | Sorghum | nucleus, plastid | 38.72 | 45.05 |
| EER89802 | Sorghum | cytosol | 47.66 | 44.98 |
| OQU77659 | Sorghum | nucleus | 47.23 | 44.58 |
| CDY50750 | Canola | nucleus, plastid | 53.62 | 43.3 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 36.6 | 43.22 |
| KXG31707 | Sorghum | nucleus | 39.57 | 42.27 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 32.34 | 40.86 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 39.15 | 40.71 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 56.6 | 40.18 |
| EES16315 | Sorghum | cytosol | 37.87 | 36.48 |
| KXG33104 | Sorghum | nucleus, plastid | 42.55 | 36.1 |
| KXG22521 | Sorghum | nucleus | 39.57 | 33.33 |
| CDY63072 | Canola | nucleus | 53.19 | 31.41 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:8085959 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:C5X187 |
| EnsemblPlants:EER90896 | ProteinID:EER90896 | ProteinID:EER90896.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF21 | EnsemblPlantsGene:SORBI_3001G094800 | SUPFAM:SSF54277 | unigene:Sbi.14269 |
| UniParc:UPI0001A8239A | RefSeq:XP_002463898.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:7278514..7281576
Molecular Weight (calculated)
25229.1 Da
IEP (calculated)
9.281
GRAVY (calculated)
-0.553
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGADVDVGT ELRLGLPGGG AEAAKAAKRG FEDTIDLKLK LPTAGMEEAA AAKPEPAAEK AKRPAEAPAA DAEKPPAPKA QAVGWPPVRS YRRNVMTVQS
101: VKSKKEEEPE KQQSAAANAS GNSSAFVKVS MDGAPYLRKV DLKMYNSYKD LSIALKKMFS TFTTSGNNMN EGKLVDPVSG ADVVTTYEDK DGDWMLVGDV
201: PWEMFVESCK RLRIMKSSEA IGLAPRTKDK CKNKS
101: VKSKKEEEPE KQQSAAANAS GNSSAFVKVS MDGAPYLRKV DLKMYNSYKD LSIALKKMFS TFTTSGNNMN EGKLVDPVSG ADVVTTYEDK DGDWMLVGDV
201: PWEMFVESCK RLRIMKSSEA IGLAPRTKDK CKNKS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.