CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G119500.1	Wheat	nucleus	71.78	73.23
TraesCS1B01G138100.1	Wheat	cytosol	71.78	73.23
HORVU1Hr1G025670.3	Barley	nucleus	71.78	72.5
KXG31707	Sorghum	nucleus	70.3	64.55
Os05t0178600-01	Rice	nucleus	66.83	63.68
TraesCS1A01G118400.2	Wheat	cytosol	60.89	60.59
KXG20284	Sorghum	plastid	50.99	55.38
GSMUA_Achr9P02960_001	Banana	nucleus	53.47	52.17
GSMUA_AchrUn_...	Banana	nucleus	54.95	50.68
KRH23505	Soybean	nucleus	44.06	48.63
KRH09810	Soybean	nucleus	43.56	46.56
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	49.01	45.83
PGSC0003DMT400006798	Potato	nucleus	46.53	44.34
GSMUA_Achr4P08960_001	Banana	nucleus	53.96	40.07
EER90896	Sorghum	nucleus	45.05	38.72
Solyc03g120390.2.1	Tomato	nucleus, plastid	47.03	37.7
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	46.53	35.61
EER98076	Sorghum	cytosol, mitochondrion, nucleus	34.16	34.67
VIT_09s0002g05160.t01	Wine grape	nucleus	49.51	34.01
GSMUA_Achr7P13250_001	Banana	nucleus	49.01	33.33
EER90734	Sorghum	cytosol, nucleus, plastid	30.69	33.33
EER89802	Sorghum	cytosol	41.09	33.33
EES17334	Sorghum	cytosol	46.04	33.1
EER93778	Sorghum	cytosol, nucleus, plastid	36.14	32.3
OQU77659	Sorghum	nucleus	38.12	30.92
EES16315	Sorghum	cytosol	36.63	30.33
KXG33104	Sorghum	nucleus, plastid	39.11	28.52
KXG22521	Sorghum	nucleus	37.62	27.24

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:8072719	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:C5Z169
EnsemblPlants:EES19135	ProteinID:EES19135	ProteinID:EES19135.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	EnsemblPlantsGene:SORBI_3009G065000	SUPFAM:SSF54277	unigene:Sbi.12903
UniParc:UPI0001A88DEA	RefSeq:XP_002440705.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:6901859..6905225

Molecular Weight (calculated)

21720.5 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.374

Length

202 amino acids

Sequence
(BLAST)

001: MSEGPARSST AESSSSAASS SGLDFEDTAL ALTLRLPGSD SDVRKRAAST STPVAGRCSP RASASNEAPP APKAQVVGWP PVSRNRRNAA LPSRGKFVKV
101: AVAGAPYQRK VDLEAYAGYD QLLAALQDKF TSHFTVRRRV GNDEMALVDV VSGAEYVPTY EDKDGDWMLV GDVPWRMFVE TCQRLRLMKS SEVVNLAPRA
201: AE

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.