Factsheet for TraesCS1B01G138100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G119500.1	Wheat	nucleus	99.49	99.49
HORVU1Hr1G025670.3	Barley	nucleus	98.48	97.5
TraesCS1A01G118400.2	Wheat	cytosol	86.87	84.73
Os05t0178600-01	Rice	nucleus	78.79	73.58
EES19135	Sorghum	nucleus, plastid	73.23	71.78
TraesCS3B01G140700.1	Wheat	cytosol	67.68	69.43
TraesCS7B01G256100.1	Wheat	cytosol, nucleus, plastid	58.08	63.54
GSMUA_Achr9P02960_001	Banana	nucleus	57.58	55.07
KRH23505	Soybean	nucleus	48.99	53.01
GSMUA_AchrUn_...	Banana	nucleus	58.59	52.97
KRH09810	Soybean	nucleus	48.99	51.32
PGSC0003DMT400006798	Potato	nucleus	52.02	48.58
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	52.02	47.69
Solyc03g120390.2.1	Tomato	nucleus, plastid	52.53	41.27
GSMUA_Achr4P08960_001	Banana	nucleus	55.05	40.07
TraesCS5B01G386800.1	Wheat	nucleus	45.96	38.89
TraesCS5B01G058500.1	Wheat	nucleus	48.99	38.49
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	33.33	37.29
TraesCS7B01G242800.1	Wheat	nucleus	44.44	36.07
VIT_09s0002g05160.t01	Wine grape	nucleus	52.02	35.03
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	44.44	34.78
TraesCS5B01G058800.1	Wheat	cytosol	36.87	34.11
TraesCS3B01G181500.1	Wheat	cytosol	41.92	33.88
GSMUA_Achr7P13250_001	Banana	nucleus	50.0	33.33
TraesCS5B01G381800.1	Wheat	nucleus	34.34	32.08
TraesCS3B01G303900.1	Wheat	nucleus, plastid	41.41	32.03
TraesCS1B01G418400.1	Wheat	nucleus	35.86	28.98

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF86	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS1B01G138100	EnsemblPlants:TraesCS1B01G138100.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:-:177836020..177838345

Molecular Weight (calculated)

21509.3 Da

IEP (calculated)

7.256

GRAVY (calculated)

-0.419

Length

198 amino acids

Sequence
(BLAST)

001: MSVETERSST ESSAASGLDF EDTALTLRLP GSDPDRKRAS TSDPDCPSPT AAASDSPPSP KAQVVGWPPV RSFRKNALAA AASSKTKFVK VAVDGAPYLR
101: KVDLKAYAGY TSSASYDQLL ATLQDKFISH LTVRKLGNEE MKLVDAVSGT EYVPTYEDKD GDWMLVGDVP WRMFVETCQR IRLMKSSEVV NLAPRAGR

Best Arabidopsis Sequence Match ( AT1G04250.1 )
(BLAST)

001: MMGSVELNLR ETELCLGLPG GDTVAPVTGN KRGFSETVDL KLNLNNEPAN KEGSTTHDVV TFDSKEKSAC PKDPAKPPAK AQVVGWPPVR SYRKNVMVSC
101: QKSSGGPEAA AFVKVSMDGA PYLRKIDLRM YKSYDELSNA LSNMFSSFTM GKHGGEEGMI DFMNERKLMD LVNSWDYVPS YEDKDGDWML VGDVPWPMFV
201: DTCKRLRLMK GSDAIGLAPR AMEKCKSRA

Arabidopsis Description

IAA17Auxin-responsive protein IAA17 [Source:UniProtKB/Swiss-Prot;Acc:P93830]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.