Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G390200.1 | Wheat | plastid | 89.8 | 84.29 |
| TraesCS1D01G398400.1 | Wheat | nucleus | 90.61 | 84.09 |
| KXG22521 | Sorghum | nucleus | 77.96 | 68.46 |
| Zm00001d009532_P001 | Maize | nucleus | 75.1 | 65.48 |
| HORVU1Hr1G086070.6 | Barley | plastid | 82.86 | 64.86 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 74.29 | 62.98 |
| Os05t0559400-01 | Rice | nucleus | 71.84 | 62.63 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 58.37 | 55.86 |
| TraesCS7B01G242800.1 | Wheat | nucleus | 46.12 | 46.31 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 44.49 | 44.49 |
| KRH74730 | Soybean | plastid | 28.98 | 44.1 |
| TraesCS3B01G181500.1 | Wheat | cytosol | 43.27 | 43.27 |
| GSMUA_Achr10P... | Banana | nucleus | 47.35 | 39.73 |
| Solyc03g120500.2.1 | Tomato | nucleus | 44.9 | 39.57 |
| PGSC0003DMT400006548 | Potato | plastid | 41.63 | 39.08 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 50.2 | 38.44 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 27.76 | 38.42 |
| KRH23426 | Soybean | nucleus | 47.76 | 38.11 |
| KRH09902 | Soybean | nucleus | 48.98 | 37.62 |
| TraesCS7B01G256100.1 | Wheat | cytosol, nucleus, plastid | 27.76 | 37.57 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 48.57 | 37.19 |
| Bra011082.1-P | Field mustard | nucleus | 43.67 | 36.9 |
| CDY06836 | Canola | nucleus | 37.55 | 36.51 |
| TraesCS3B01G140700.1 | Wheat | cytosol | 28.57 | 36.27 |
| KRH60250 | Soybean | nucleus | 42.45 | 36.24 |
| PGSC0003DMT400001013 | Potato | nucleus | 41.22 | 36.2 |
| TraesCS1B01G138100.1 | Wheat | cytosol | 28.98 | 35.86 |
| Solyc12g007230.1.1 | Tomato | nucleus | 42.45 | 35.25 |
| KRH39325 | Soybean | nucleus | 44.08 | 35.18 |
| AT4G29080.1 | Thale cress | nucleus | 43.67 | 35.08 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 35.92 | 34.78 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 30.2 | 34.58 |
| KRH44313 | Soybean | nucleus | 45.31 | 34.47 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 32.65 | 34.19 |
| KRH47242 | Soybean | nucleus | 44.08 | 33.86 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 34.69 | 33.73 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 28.98 | 33.49 |
| KRH41538 | Soybean | golgi, plasma membrane | 41.63 | 28.57 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF9 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1B01G418400 | EnsemblPlants:TraesCS1B01G418400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1B:-:642391305..642393424
Molecular Weight (calculated)
25341.4 Da
IEP (calculated)
5.398
GRAVY (calculated)
-0.491
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPPNLEARD YIGLGPSAAP APASSSCSSS ASGDAGPHLA LRLGLPGCGS PGRDGPEDAA VDAALTLGPS PATAHASHRG GAKRGFADSL DGSAARAAGE
101: EDKKKGEAAA AAGAGAPPAA KAQVVGWPPV RSYRKNTLAA NATKTKAENE GRSEAGCCYV KVSMDGAPYL RKVDLKTYSS YDNLSLELEK MFSCFITGKS
201: SSCKTSTRDR LTDGSRADAL QDQEYVLTYE DKDADWMLVG DLPWE
101: EDKKKGEAAA AAGAGAPPAA KAQVVGWPPV RSYRKNTLAA NATKTKAENE GRSEAGCCYV KVSMDGAPYL RKVDLKTYSS YDNLSLELEK MFSCFITGKS
201: SSCKTSTRDR LTDGSRADAL QDQEYVLTYE DKDADWMLVG DLPWE
001: MSYRLLSVDK DELVTSPCLK ERNYLGLSDC SSVDSSTIPN VVGKSNLNFK ATELRLGLPE SQSPERETDF GLLSPRTPDE KLLFPLLPSK DNGSATTGHK
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
101: NVVSGNKRGF ADTWDEFSGV KGSVRPGGGI NMMLSPKVKD VSKSIQEERS HAKGGLNNAP AAKAQVVGWP PIRSYRKNTM ASSTSKNTDE VDGKPGLGVL
201: FVKVSMDGAP YLRKVDLRTY TSYQQLSSAL EKMFSCFTLG QCGLHGAQGR ERMSEIKLKD LLHGSEFVLT YEDKDGDWML VGDVPWEIFT ETCQKLKIMK
301: GSDSIGLAPG AVEKSKNKER V
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.