Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 73.38 | 93.24 |
| TraesCS1B01G100300.1 | Wheat | plastid | 71.1 | 78.9 |
| Os02t0723400-02 | Rice | nucleus | 44.87 | 57.56 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 39.92 | 50.72 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 31.18 | 47.13 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 30.8 | 46.29 |
| CDY46895 | Canola | cytosol | 12.55 | 45.83 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 30.42 | 45.45 |
| Bra021257.1-P | Field mustard | cytosol | 12.17 | 44.44 |
| Bra022224.1-P | Field mustard | nucleus, plastid | 26.62 | 44.3 |
| CDX92140 | Canola | nucleus, plastid | 26.62 | 44.3 |
| VIT_05s0020g01070.t01 | Wine grape | plastid | 33.08 | 43.94 |
| CDX95843 | Canola | plastid | 25.86 | 43.87 |
| KRH33660 | Soybean | plastid | 28.9 | 42.94 |
| CDY71609 | Canola | nucleus, plastid | 25.48 | 42.68 |
| CDX82361 | Canola | cytosol, plastid | 25.1 | 42.04 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 25.1 | 41.77 |
| KRH69143 | Soybean | plastid | 28.52 | 41.67 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 12.93 | 41.46 |
| AT3G62100.1 | Thale cress | plastid | 26.62 | 40.7 |
| Bra001670.1-P | Field mustard | nucleus | 22.81 | 40.54 |
| CDY58757 | Canola | plastid | 26.24 | 40.12 |
| Bra003484.1-P | Field mustard | nucleus, plastid | 26.24 | 40.12 |
| CDY25089 | Canola | plastid | 26.24 | 39.88 |
| CDX67874 | Canola | plastid | 26.24 | 39.88 |
| Bra040476.1-P | Field mustard | cytosol, plastid | 26.24 | 39.66 |
| CDY48005 | Canola | cytosol, plastid | 26.24 | 39.66 |
| KRG96613 | Soybean | plastid | 26.62 | 39.55 |
| KRH68346 | Soybean | plastid | 27.0 | 39.44 |
| CDY27511 | Canola | cytosol, plastid | 25.86 | 39.08 |
| AT2G46990.1 | Thale cress | plastid | 25.86 | 38.86 |
| CDY11402 | Canola | plastid | 25.86 | 38.42 |
| Bra007661.1-P | Field mustard | plastid | 25.86 | 38.42 |
| Bra014411.1-P | Field mustard | nucleus, plastid | 17.11 | 35.71 |
| KRH19441 | Soybean | endoplasmic reticulum, vacuole | 32.32 | 34.84 |
| KRH02508 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 32.32 | 32.69 |
| CDY46058 | Canola | plastid | 18.63 | 29.34 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 17.11 | 25.71 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 15.59 | 18.22 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 19.39 | 17.89 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 17.87 | 17.41 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 14.45 | 15.08 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 15.21 | 13.61 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 17.49 | 12.74 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 16.35 | 12.61 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 | SUPFAM:SSF54277 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:TraesCS1A01G082700 | EnsemblPlants:TraesCS1A01G082700.2 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:-:65799067..65800185
Molecular Weight (calculated)
28054.8 Da
IEP (calculated)
8.876
GRAVY (calculated)
-0.004
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPLSSFLSL SLYSCLMECK AASESPSSAP SSSMDSCGAG GPRATVSTAS SCYRPAIGRG LSTDLHLGLS LRSCSSSFHT ADGVSASTPR SLYRLVILSK
101: NLTFLFIICI GRSLAPLCTS TDASINPFLR STLTTTTTMR PTAPSSDPAH QRGGGGGGHG QRSLFVKVYM EGVPIGRKLD LLLLDGYDRL LAVLGRMFKA
201: SIIHPDTVGR DHRVVLGEKQ ARHVVTYQDQ EGDWLMAGDV PWELFLAGVK KLKIARVDSS TSD
101: NLTFLFIICI GRSLAPLCTS TDASINPFLR STLTTTTTMR PTAPSSDPAH QRGGGGGGHG QRSLFVKVYM EGVPIGRKLD LLLLDGYDRL LAVLGRMFKA
201: SIIHPDTVGR DHRVVLGEKQ ARHVVTYQDQ EGDWLMAGDV PWELFLAGVK KLKIARVDSS TSD
001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
Arabidopsis Description
IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.