Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040476.1-P | Field mustard | cytosol, plastid | 87.43 | 87.93 |
| CDY48005 | Canola | cytosol, plastid | 87.43 | 87.93 |
| CDY27511 | Canola | cytosol, plastid | 86.86 | 87.36 |
| AT3G62100.1 | Thale cress | plastid | 82.86 | 84.3 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 51.43 | 51.43 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 47.43 | 47.16 |
| KRG96613 | Soybean | plastid | 45.71 | 45.2 |
| KRH68346 | Soybean | plastid | 45.71 | 44.44 |
| KRH33660 | Soybean | plastid | 44.57 | 44.07 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 43.43 | 43.68 |
| KRH69143 | Soybean | plastid | 44.57 | 43.33 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 38.29 | 42.41 |
| Os01t0286900-01 | Rice | nucleus | 27.43 | 41.74 |
| EES00605 | Sorghum | nucleus, plastid | 40.57 | 36.79 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 35.43 | 34.25 |
| Os02t0723400-02 | Rice | nucleus | 40.0 | 34.15 |
| Zm00001d008201_P001 | Maize | cytosol | 25.14 | 33.85 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 38.29 | 32.37 |
| TraesCS1B01G100300.1 | Wheat | plastid | 38.29 | 28.27 |
| AT5G25890.1 | Thale cress | nucleus | 26.29 | 26.29 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 30.86 | 26.09 |
| TraesCS1A01G082700.2 | Wheat | plastid | 38.86 | 25.86 |
| AT1G04550.2 | Thale cress | cytosol | 30.29 | 22.18 |
| AT1G04100.1 | Thale cress | cytosol | 31.43 | 21.07 |
| AT2G33310.2 | Thale cress | nucleus | 29.14 | 20.65 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 33.14 | 19.21 |
| AT1G51950.1 | Thale cress | nucleus | 26.86 | 17.6 |
| AT3G16500.1 | Thale cress | nucleus | 25.14 | 16.36 |
| AT4G32280.1 | Thale cress | cytosol | 23.43 | 16.33 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:819313 | UniProt:A0A178W181 | ProteinID:AAC34236.1 | ProteinID:ADL70726.1 |
| ProteinID:AEC10783.1 | EMBL:AF348576 | EMBL:AK117233 | ProteinID:ANM63323.1 | ArrayExpress:AT2G46990 | EnsemblPlantsGene:AT2G46990 |
| RefSeq:AT2G46990 | TAIR:AT2G46990 | RefSeq:AT2G46990-TAIR-G | EnsemblPlants:AT2G46990.1 | TAIR:AT2G46990.1 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | GO:GO:0009647 |
| GO:GO:0009653 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009987 | GO:GO:0010588 | GO:GO:0048364 | Symbol:IAA20 | InterPro:IPR000270 | RefSeq:NP_001325417.1 |
| RefSeq:NP_182222.1 | UniProt:O24410 | ProteinID:OAP10862.1 | InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0001078 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009030 |
| PO:PO:0009046 | PO:PO:0020132 | PO:PO:0020149 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 |
| SUPFAM:SSF54277 | EMBL:U49076 | UniParc:UPI00000041E9 | SEG:seg | : | : |
Description
IAA20Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A178W181]
Coordinates
chr2:+:19307714..19309071
Molecular Weight (calculated)
19445.6 Da
IEP (calculated)
4.452
GRAVY (calculated)
-0.399
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRSSSSS SIESSSKSNP FGASSSTRNL STDLRLGLSF GTSSGTQYFN GGYGYSVAAP AVEDAEYVAA VEEEEENECN SVGSFYVKVN MEGVPIGRKI
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
101: DLMSLNGYRD LIRTLDFMFN ASILWAEEED MCNEKSHVLT YADKEGDWMM VGDVPWEMFL STVRRLKISR ANYHY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.