Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67874 | Canola | plastid | 91.86 | 91.33 |
| CDY58757 | Canola | plastid | 91.28 | 91.28 |
| Bra003484.1-P | Field mustard | nucleus, plastid | 91.28 | 91.28 |
| CDY25089 | Canola | plastid | 90.7 | 90.17 |
| Bra014411.1-P | Field mustard | nucleus, plastid | 65.7 | 89.68 |
| CDY11402 | Canola | plastid | 91.86 | 89.27 |
| Bra007661.1-P | Field mustard | plastid | 91.86 | 89.27 |
| AT2G46990.1 | Thale cress | plastid | 84.3 | 82.86 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 51.16 | 50.29 |
| KRH33660 | Soybean | plastid | 46.51 | 45.2 |
| KRG96613 | Soybean | plastid | 45.93 | 44.63 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 45.35 | 44.32 |
| KRH68346 | Soybean | plastid | 45.93 | 43.89 |
| KRH69143 | Soybean | plastid | 45.93 | 43.89 |
| Os01t0286900-01 | Rice | nucleus | 29.07 | 43.48 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 43.6 | 43.1 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 37.79 | 41.14 |
| EES00605 | Sorghum | nucleus, plastid | 41.86 | 37.31 |
| Os02t0723400-02 | Rice | nucleus | 42.44 | 35.61 |
| Zm00001d008201_P001 | Maize | cytosol | 26.16 | 34.62 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 36.05 | 34.25 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 40.7 | 33.82 |
| TraesCS1B01G100300.1 | Wheat | plastid | 40.7 | 29.54 |
| TraesCS1A01G082700.2 | Wheat | plastid | 40.7 | 26.62 |
| AT5G25890.1 | Thale cress | nucleus | 26.16 | 25.71 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 30.81 | 25.6 |
| AT1G04550.2 | Thale cress | cytosol | 31.4 | 22.59 |
| AT1G04100.1 | Thale cress | cytosol | 33.14 | 21.84 |
| AT2G33310.2 | Thale cress | nucleus | 30.23 | 21.05 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 34.3 | 19.54 |
| AT1G51950.1 | Thale cress | nucleus | 27.91 | 17.98 |
| AT4G32280.1 | Thale cress | cytosol | 25.58 | 17.53 |
| AT3G16500.1 | Thale cress | nucleus | 26.16 | 16.73 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:825383 | UniProt:A0A178VME1 | EMBL:AB493662 | ProteinID:ADB93675.1 |
| ProteinID:ADB93676.1 | ProteinID:ADB93677.1 | ProteinID:ADB93678.1 | ProteinID:ADB93679.1 | ProteinID:ADL70787.1 | ProteinID:ADL70788.1 |
| ProteinID:ADL70789.1 | ProteinID:ADL70790.1 | ProteinID:ADL70791.1 | ProteinID:ADL70792.1 | ProteinID:ADL70793.1 | ProteinID:ADL70794.1 |
| ProteinID:ADL70795.1 | ProteinID:ADL70796.1 | ProteinID:ADL70797.1 | ProteinID:ADL70798.1 | ProteinID:ADL70799.1 | ProteinID:AEE80310.1 |
| ProteinID:ANM65875.1 | ArrayExpress:AT3G62100 | EnsemblPlantsGene:AT3G62100 | RefSeq:AT3G62100 | TAIR:AT3G62100 | RefSeq:AT3G62100-TAIR-G |
| EnsemblPlants:AT3G62100.1 | TAIR:AT3G62100.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EMBL:AY669801 | UniProt:C0SVF9 |
| ProteinID:CAB71870.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009606 | GO:GO:0009628 | GO:GO:0009630 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010262 |
| GO:GO:0048364 | Symbol:IAA30 | InterPro:IPR000270 | RefSeq:NP_001327812.1 | RefSeq:NP_191769.1 | ProteinID:OAP06621.1 |
| InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020149 | PO:PO:0025022 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 | UniProt:Q9M1R4 | SUPFAM:SSF54277 | UniParc:UPI00000A6F49 |
| SEG:seg | : | : | : | : | : |
Description
IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
Coordinates
chr3:+:22995686..22996809
Molecular Weight (calculated)
19239.4 Da
IEP (calculated)
4.388
GRAVY (calculated)
-0.470
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.