Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 89.71 | 90.23 |
| Bra009867.1-P | Field mustard | cytosol | 89.14 | 88.64 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 87.43 | 87.93 |
| CDX87072 | Canola | cytosol | 85.14 | 85.14 |
| Bra036557.1-P | Field mustard | nucleus | 82.86 | 82.86 |
| CDY19790 | Canola | cytosol | 82.29 | 73.85 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 43.43 | 33.78 |
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 44.0 | 33.77 |
| Os01t0190300-01 | Rice | nucleus | 45.71 | 33.61 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 43.43 | 33.48 |
| AT1G51950.1 | Thale cress | nucleus | 50.86 | 33.33 |
| Zm00001d039513_P001 | Maize | cytosol, nucleus, plastid | 42.86 | 32.75 |
| AT3G16500.1 | Thale cress | nucleus | 49.71 | 32.34 |
| TraesCS3B01G127400.1 | Wheat | nucleus | 42.29 | 32.17 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 41.71 | 31.74 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 41.14 | 31.58 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 42.86 | 30.36 |
| GSMUA_Achr5P09310_001 | Banana | endoplasmic reticulum | 40.57 | 30.21 |
| HORVU3Hr1G019750.4 | Barley | cytosol, nucleus, plastid | 41.71 | 29.8 |
| EES17832 | Sorghum | nucleus | 41.14 | 29.75 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 42.29 | 29.37 |
| Os02t0228900-01 | Rice | nucleus | 50.29 | 29.33 |
| Zm00001d016277_P002 | Maize | nucleus | 48.0 | 28.09 |
| OQU84670 | Sorghum | nucleus | 46.86 | 28.08 |
| AT3G17600.1 | Thale cress | nucleus, plastid | 25.14 | 27.85 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 38.86 | 27.53 |
| AT2G46990.1 | Thale cress | plastid | 26.29 | 26.29 |
| AT3G62100.1 | Thale cress | plastid | 25.71 | 26.16 |
| AT2G33310.2 | Thale cress | nucleus | 36.57 | 25.91 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 43.43 | 25.59 |
| AT1G04550.2 | Thale cress | cytosol | 34.86 | 25.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.57 | 25.32 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 42.29 | 25.17 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 42.29 | 25.08 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 52.0 | 24.8 |
| Os01t0741900-01 | Rice | nucleus | 46.86 | 24.48 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 46.29 | 24.18 |
| Os05t0523300-01 | Rice | nucleus | 44.57 | 23.85 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 46.29 | 23.75 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 46.29 | 23.62 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 45.71 | 22.66 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 45.71 | 22.41 |
| Zm00001d038784_P001 | Maize | nucleus | 45.14 | 22.38 |
| KXG22376 | Sorghum | nucleus | 44.0 | 22.32 |
| KXG33336 | Sorghum | nucleus | 46.29 | 22.19 |
| OQU86163 | Sorghum | golgi, plastid | 44.0 | 21.51 |
| AT1G04100.1 | Thale cress | cytosol | 32.0 | 21.46 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 34.29 | 19.87 |
| AT4G32280.1 | Thale cress | cytosol | 23.43 | 16.33 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:832658 | UniProt:A0A178USR5 | ProteinID:AAD40120.1 | EMBL:AC005405 |
| ProteinID:ADB93666.1 | ProteinID:ADB93667.1 | ProteinID:ADB93668.1 | ProteinID:ADL70761.1 | ProteinID:ADL70767.1 | ProteinID:ADL70770.1 |
| ProteinID:ADL70772.1 | ProteinID:AED93498.1 | EMBL:AF149816 | EMBL:AK228312 | ArrayExpress:AT5G25890 | EnsemblPlantsGene:AT5G25890 |
| RefSeq:AT5G25890 | TAIR:AT5G25890 | RefSeq:AT5G25890-TAIR-G | EnsemblPlants:AT5G25890.1 | TAIR:AT5G25890.1 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | EMBL:AY669799 | EMBL:BT000427 | EMBL:BT002175 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010102 | Symbol:IAA28 |
| InterPro:IPR000270 | RefSeq:NP_568478.1 | ProteinID:OAO96194.1 | InterPro:PB1_dom | PFAM:PF02309 | PO:PO:0000013 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007103 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF2 | UniProt:Q2VWA1 | UniProt:Q9XFM0 | SUPFAM:SSF54277 | UniParc:UPI0000001AE8 | SEG:seg |
Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
Coordinates
chr5:+:9033204..9035140
Molecular Weight (calculated)
20207.0 Da
IEP (calculated)
9.576
GRAVY (calculated)
-0.853
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.