Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16300_001 | Banana | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.11 | 46.49 |
| CDX87072 | Canola | cytosol | 30.64 | 41.14 |
| AT5G25890.1 | Thale cress | nucleus | 30.21 | 40.57 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.79 | 40.23 |
| Bra009867.1-P | Field mustard | cytosol | 29.79 | 39.77 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.36 | 39.66 |
| Bra036557.1-P | Field mustard | nucleus | 29.36 | 39.43 |
| PGSC0003DMT400006709 | Potato | nucleus | 45.53 | 37.81 |
| Solyc03g121060.2.1 | Tomato | nucleus | 45.53 | 37.28 |
| Bra018938.1-P | Field mustard | nucleus | 39.57 | 36.76 |
| CDY22876 | Canola | nucleus | 39.15 | 36.36 |
| CDY33844 | Canola | nucleus | 38.72 | 35.97 |
| CDY19790 | Canola | cytosol | 29.79 | 35.9 |
| CDX87863 | Canola | nucleus | 38.72 | 35.83 |
| CDY46538 | Canola | nucleus | 40.85 | 35.56 |
| Bra014303.1-P | Field mustard | nucleus | 40.85 | 35.56 |
| CDY64626 | Canola | cytosol | 40.43 | 35.32 |
| Bra021184.1-P | Field mustard | nucleus | 40.43 | 35.32 |
| AT3G16500.1 | Thale cress | nucleus | 40.43 | 35.32 |
| CDY34957 | Canola | nucleus | 40.43 | 35.32 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 17.87 | 35.29 |
| AT1G51950.1 | Thale cress | nucleus | 40.0 | 35.21 |
| CDY53439 | Canola | nucleus | 40.0 | 34.43 |
| CDY43104 | Canola | nucleus | 38.72 | 34.08 |
| KRH09948 | Soybean | nucleus | 45.11 | 33.12 |
| CDX75884 | Canola | cytosol | 37.87 | 32.84 |
| CDX92077 | Canola | nucleus | 39.57 | 32.63 |
| Bra022164.1-P | Field mustard | nucleus | 39.57 | 32.63 |
| KRH44271 | Soybean | nucleus | 42.98 | 32.27 |
| KRH47203 | Soybean | nucleus | 43.4 | 32.18 |
| CDX82399 | Canola | nucleus | 37.02 | 31.99 |
| Bra001634.1-P | Field mustard | nucleus | 37.02 | 31.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.85 | 31.17 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 19.15 | 31.03 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 44.68 | 30.43 |
| KRH23388 | Soybean | nucleus | 43.83 | 29.77 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 45.53 | 29.16 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 48.09 | 25.74 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 18.3 | 24.43 |
| GSMUA_Achr7P03120_001 | Banana | nucleus | 25.53 | 24.39 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 17.87 | 24.14 |
| GSMUA_Achr11P... | Banana | nucleus | 29.79 | 23.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 29.36 | 22.04 |
| GSMUA_Achr2P04230_001 | Banana | nucleus | 28.09 | 21.71 |
| GSMUA_Achr10P... | Banana | nucleus | 27.66 | 20.97 |
| GSMUA_Achr9P08370_001 | Banana | nucleus | 22.55 | 20.87 |
| GSMUA_Achr6P29100_001 | Banana | nucleus | 23.4 | 18.58 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G09310_001 | EnsemblPlants:GSMUA_Achr5P09310_001 |
| EnsemblPlants:GSMUA_Achr5T09310_001 | InterPro:IPR000270 | UniProt:M0SX10 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF2 | SUPFAM:SSF54277 | UniParc:UPI0002952C80 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G09310_001]
Coordinates
chr5:-:6746499..6749454
Molecular Weight (calculated)
26270.2 Da
IEP (calculated)
5.807
GRAVY (calculated)
-0.505
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAFLDGFRF VYHILLFISG PQQQKTSGAN LKDELPQSQE RKAAHEAPEN ASAANMNSQT RAASVPLVGW PPIRTFRKNF ATGSSKPSPE PQSGDLQSKV
101: KLEDCKKGLF VKINMEGIPI GRKIDLSTYN SYEKLSLAVE EHFRDLLAAQ KDPSTADTLK DGEKQVFTGL LDGTGEYSLI YEDNEGDRML VGDVPWDMFV
201: SMAKRLRVIK STDLSVIRVQ DQYAGKEQQQ SVELY
101: KLEDCKKGLF VKINMEGIPI GRKIDLSTYN SYEKLSLAVE EHFRDLLAAQ KDPSTADTLK DGEKQVFTGL LDGTGEYSLI YEDNEGDRML VGDVPWDMFV
201: SMAKRLRVIK STDLSVIRVQ DQYAGKEQQQ SVELY
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.