Factsheet for GSMUA_Achr2P04230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	68.09	66.13
GSMUA_Achr10P...	Banana	nucleus	59.87	58.71
GSMUA_Achr11P...	Banana	nucleus	46.05	46.67
GSMUA_Achr9P26900_001	Banana	plastid	17.11	43.7
GSMUA_Achr9P26910_001	Banana	nucleus	18.09	37.93
GSMUA_Achr8P29850_001	Banana	nucleus	20.07	34.66
GSMUA_Achr9P16800_001	Banana	nucleus	18.42	32.18
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	22.04	29.39
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	21.71	28.09
GSMUA_Achr7P03120_001	Banana	nucleus	20.39	25.2
GSMUA_Achr7P13680_001	Banana	nucleus	27.63	22.89
GSMUA_AchrUn_...	Banana	nucleus	22.37	22.08
GSMUA_Achr9P08370_001	Banana	nucleus	17.76	21.26
GSMUA_Achr6P29100_001	Banana	nucleus	19.74	20.27

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr2G04230_001
EnsemblPlants:GSMUA_Achr2P04230_001	EnsemblPlants:GSMUA_Achr2T04230_001	InterPro:IPR000270	UniProt:M0S514	InterPro:PB1_dom	PFAM:PF02309
PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277	UniParc:UPI000294E845	SEG:seg

Description

Putative Auxin-responsive protein IAA10 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04230_001]

Coordinates

chr2:+:9684109..9686336

Molecular Weight (calculated)

32609.4 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.438

Length

304 amino acids

Sequence
(BLAST)

001: MGDAEAEVAN VDHAEEEEEL EEEELELGLT LGAAKRGKAT PAMWGPCCRI LTAKDFPPLA SLASPRSPSA SSVSSSSGTN LGGGGTGTGV AGTKRAAESI
101: SPDVGSSPHP PSQVVVGWPP IRAFRMNSLF NHFKDNAPEV DAAVAVKKAI VPSRAGNDSQ HQGSRGKVMR RSFFVKVKMD GDPIGRKVDL DAHHSYEALA
201: DALELMFHKP TKASALAVSV DGAKISNLLD GSSGFALTYE DKDGDWMLVG DVPWGMFLET VKRLRIMRTS DANGLSKSVH FGKHQDFYRQ RNDRKHPAYG
301: LQPE

Best Arabidopsis Sequence Match ( AT4G28640.1 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KAQMIL

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.